PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022762460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27556.3 Da PI: 8.0757 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g+lKK +ELSvLCda++ +iifsstgk+ y+s XP_022762460.1 9 KRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 76.8 | 5.7e-26 | 71 | 170 | 1 | 99 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqk +g++ e+ + e+l++ela L+ke++ Lq + R++ Ged++s+ l+eL qLeq+Le+s++k+R++Knell +q+++l++ke+ l+een ++ XP_022762460.1 71 YQKVTGTRiPEHDNREHLYNELAVLRKETRRLQLSMRRYTGEDMSSIPLEELDQLEQELERSVNKVRDRKNELLQQQLDNLRRKERILEEENSNM 165 678888888888999*****************************************************************************999 PP K-box 95 rkkle 99 + ++ XP_022762460.1 166 YRWIQ 170 87766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MGRGKIPIKR IENQTTRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS TGKMCQYCSE 60 PYRMEQIIER YQKVTGTRIP EHDNREHLYN ELAVLRKETR RLQLSMRRYT GEDMSSIPLE 120 ELDQLEQELE RSVNKVRDRK NELLQQQLDN LRRKERILEE ENSNMYRWIQ EHRAAIEYQQ 180 GGLEAKPVEH QQVLDQFPFY GEPSSVLQLA TIPQQFHSYQ LQLAQPNLQD SNV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-92 | MIKC_MADS family protein |