PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022761866.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 340aa MW: 38367.3 Da PI: 6.5108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022761866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	201	226	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ XP_022761866.1 201 YQPDICKDYKETGYCGYGDSCKFMHD 226 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MADSSAPQNA GEEPQQSETE PQSEQLCNFF RKPKKGKNIR KRTINEDEGE DEDSRNGASL 60 LHNQKKALKP DNKLYFSTGS SKSAAATESN IESDKPNFHF ESSKEIQVQN DSRATATLET 120 ETEFTKDARA IREKVLKRAE EALKGKNTST GGEKLYTGMH GYVDHKAGFR REQTVASEKA 180 GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQLEKDW 240 EEAEKARKRN LALGGDDDDD EAGENQSDDD DEDSLPFACF ICRQPFVDPV VTKCKHYFCE 300 HCALKHHAKN KKCFVCNQPT LGIFNTAHEI RRKMAEESKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	69	RKPKKGKNIRKRTINEDEGEDEDSRNGASLLHNQKKALK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-157	C3H family protein