PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022760519.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 474aa MW: 50144.1 Da PI: 7.4934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022760519.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.1e-12	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022760519.1 44 EADCIYYLRTGFCGYGSRCRFNHPR 68 789********************96 PP
2	zf-CCCH	39.3	1.1e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ XP_022760519.1 90 QPVCQYYMRTGTCKFGSSCKYHHPK 114 689********************96 PP
3	zf-CCCH	34.3	4e-11	136	159	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++ +tG+Ck+G +CkF+H+ XP_022760519.1 136 EKECSYYVKTGQCKFGVTCKFHHP 159 679********************8 PP
4	zf-CCCH	40	6.6e-13	297	323	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p XP_022760519.1 297 PGQPECQYYMKTGDCKYGSSCRYHHPP 323 5789*********************97 PP
5	zf-CCCH	27.3	6.1e-09	345	369	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+ + CkF H++ XP_022760519.1 345 APPCTHYSQHGVCKFRAACKFDHPM 369 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MERDTESDPQ PEWTAPGPET GLEEPVWGLE LGGESESYPE RPEEADCIYY LRTGFCGYGS 60 RCRFNHPRDR AAVMGAGRGG VGEYPERAGQ PVCQYYMRTG TCKFGSSCKY HHPKQGGGSV 120 SPVPLNYYGY PLRPSEKECS YYVKTGQCKF GVTCKFHHPA PHAVQVPVPS PVHPVAPVPT 180 PVPAPTLYPT VQSPSGLSSQ QYGVVMARPP LMPGSYVQGP YGPSFLLSPS MVSVPSWNPY 240 TASVSPGTQT TVGSSSIFGV TPLSPSAAVY SGSHQPVPSS VGPSSSIQKE QSFPERPGQP 300 ECQYYMKTGD CKYGSSCRYH HPPEVIAPKA DVILSPLGLP LRPGAPPCTH YSQHGVCKFR 360 AACKFDHPMG TLSYSPSASS LADMPVAPHP VGSTIGTLAP SSSSSELRPE LLSGSSKDLV 420 PAIMSSSVSR SSESVGSVFS KGAPVPHSST QQFSQSSASS TGSGSSNTEV HASS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MERDTESDPQ PEWTAPGPET GLEEPVWGLE LGGESESYPE RPEEADCIYY LRTGFCGYGS  60
RCRFNHPRDR AAVMGAGRGG VGEYPERAGQ PVCQYYMRTG TCKFGSSCKY HHPKQGGGSV  120
SPVPLNYYGY PLRPSEKECS YYVKTGQCKF GVTCKFHHPA PHAVQVPVPS PVHPVAPVPT  180
PVPAPTLYPT VQSPSGLSSQ QYGVVMARPP LMPGSYVQGP YGPSFLLSPS MVSVPSWNPY  240
TASVSPGTQT TVGSSSIFGV TPLSPSAAVY SGSHQPVPSS VGPSSSIQKE QSFPERPGQP  300
ECQYYMKTGD CKYGSSCRYH HPPEVIAPKA DVILSPLGLP LRPGAPPCTH YSQHGVCKFR  360
AACKFDHPMG TLSYSPSASS LADMPVAPHP VGSTIGTLAP SSSSSELRPE LLSGSSKDLV  420
PAIMSSSVSR SSESVGSVFS KGAPVPHSST QQFSQSSASS TGSGSSNTEV HASS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-130	C3H family protein