PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022759952.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 320aa MW: 36428.7 Da PI: 7.5355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022759952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.8	4.7e-15	247	271	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tGtC+yGd C+FaHg XP_022759952.1 247 KTELCNKWQETGTCPYGDHCQFAHG 271 8***********************8 PP
2	zf-CCCH	21.8	3.4e-07	284	309	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ tC+yG rC+F H+ XP_022759952.1 284 YKTEVCRMVLAGETCPYGHRCHFRHS 309 9********66********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MEKPTAPSSN RNTTSAPTAT SSTTVDSQNY VSPPPSPLQN HHQYYQQDIA MDFSSMYNFI 60 FPPKSALPLS LSLPPSCCSS SDDLHLNLKV TSDVIATEHR LNQAHLVLEY QQLCDHYDLC 120 RSRLQNLIRE IETLRNENSD LRVANIELIK LLSLSSQAAT DNRNLQCEEL PDLSVKRWER 180 RNNSAQRSSL PKSVSVRSSG YLNVNQQQGS SNRQRVVNPS PQVYVPSESR REDKAIEFDV 240 HNQGTVKTEL CNKWQETGTC PYGDHCQFAH GITELRPVIR HPRYKTEVCR MVLAGETCPY 300 GHRCHFRHSL TEHEQLLISR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-67	C3H family protein