PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022758992.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 437aa MW: 47637.1 Da PI: 7.8604

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022758992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.2	9.9e-12	48	73	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG C yG++C+F+H+ XP_022758992.1 48 PGEPDCSYYLRTGLCGYGSNCRFNHP 73 5789*********************8 PP
2	zf-CCCH	36.9	6e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f+rtGtCkyG++Ck++H++ XP_022758992.1 92 QPDCGYFLRTGTCKYGSTCKYHHPK 116 789********************96 PP
3	zf-CCCH	34.5	3.4e-11	138	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f++rtG Cky + CkF+H++ XP_022758992.1 138 KSCPFYMRTGSCKYRAACKFHHPQ 161 66********************97 PP
4	zf-CCCH	39.2	1.1e-12	280	305	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ XP_022758992.1 280 DQPECRYYMNTGTCKYGSDCKYHHPR 305 689*********************96 PP
5	zf-CCCH	30.2	7.8e-10	326	350	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ + r+G CkyG++C+F H+ XP_022758992.1 326 GQAVCSSYTRYGLCKYGPTCRFDHP 350 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MPDNRQVQNN AVSNKSADNI EEAILRLKID DNNQDVGVSK SAAYPDRPGE PDCSYYLRTG 60 LCGYGSNCRF NHPAYDAQCD QYGEELPERA GQPDCGYFLR TGTCKYGSTC KYHHPKDRNG 120 AGPVTFNILG LPMRQDEKSC PFYMRTGSCK YRAACKFHHP QPASPGAGLP LNGPVGSQIL 180 PPSGVPYASG FPTWSLPRAP YVSGLCLQSA GYMPVVVSPS QSIIPAHGWS TYLGNMNPVS 240 SAGILGSNFA YNSMNPAESG SSGQVLLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK 300 YHHPRERIAN SVVNSIGPLG LPSRPGQAVC SSYTRYGLCK YGPTCRFDHP YVEYPYNYAS 360 NLPLSVFDTS LVTYQRMLPT THLSEAPLPS KLPDWARNTG SVSKKHQNLE TKNSDDPPEQ 420 AASPTLSLQS SSKTSHD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MPDNRQVQNN AVSNKSADNI EEAILRLKID DNNQDVGVSK SAAYPDRPGE PDCSYYLRTG  60
LCGYGSNCRF NHPAYDAQCD QYGEELPERA GQPDCGYFLR TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNILG LPMRQDEKSC PFYMRTGSCK YRAACKFHHP QPASPGAGLP LNGPVGSQIL  180
PPSGVPYASG FPTWSLPRAP YVSGLCLQSA GYMPVVVSPS QSIIPAHGWS TYLGNMNPVS  240
SAGILGSNFA YNSMNPAESG SSGQVLLSST SASNFPERPD QPECRYYMNT GTCKYGSDCK  300
YHHPRERIAN SVVNSIGPLG LPSRPGQAVC SSYTRYGLCK YGPTCRFDHP YVEYPYNYAS  360
NLPLSVFDTS LVTYQRMLPT THLSEAPLPS KLPDWARNTG SVSKKHQNLE TKNSDDPPEQ  420
AASPTLSLQS SSKTSHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-123	C3H family protein