PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022758888.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 413aa MW: 45030 Da PI: 5.0564

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022758888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.5e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_022758888.1 4 ICDFCGDQPSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP
2	zf-B_box	21.5	4.7e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ XP_022758888.1 46 LLCERCNSQPAFVRCVEERVSLCQNCDWMGH-GtstsnstHKRQT 89 57*****************************.5578888888766 PP
3	CCT	62.7	1.2e-21	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ XP_022758888.1 356 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 399 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MGYICDFCGD QPSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 VEERVSLCQN CDWMGHGTST SNSTHKRQTI NCYSGCPSSG ELSSIWSFFS QSPSASESTC 120 EQELGLMSIT ENIERTSWGP TENTISQNST GVAEVNNDHN VDKGSGWGGS SIPELRSAPR 180 LLEQPAGSTD TSLPKFCCPQ TKCPGLCEDD LYDDFNMDEV DLSLENYEEL FGVTLNHSEE 240 LFENGGIDSL FGMDICAADS NCQAAVAAKG SSVGLVNAMQ PACSNAASAD SIMSNKTDSI 300 LCFTARQAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS FPSATRSNAV 360 MRYKEKKKTR KFEKRVRYAS RKARADVRKR VKGRFVKAGD AYDYDPLNQT RSY

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MGYICDFCGD QPSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEERVSLCQN CDWMGHGTST SNSTHKRQTI NCYSGCPSSG ELSSIWSFFS QSPSASESTC  120
EQELGLMSIT ENIERTSWGP TENTISQNST GVAEVNNDHN VDKGSGWGGS SIPELRSAPR  180
LLEQPAGSTD TSLPKFCCPQ TKCPGLCEDD LYDDFNMDEV DLSLENYEEL FGVTLNHSEE  240
LFENGGIDSL FGMDICAADS NCQAAVAAKG SSVGLVNAMQ PACSNAASAD SIMSNKTDSI  300
LCFTARQAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS FPSATRSNAV  360
MRYKEKKKTR KFEKRVRYAS RKARADVRKR VKGRFVKAGD AYDYDPLNQT RSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-123	CO-like family protein