PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022758063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 383aa    MW: 42084 Da    PI: 9.076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022758063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.5e-115175327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C +++rtG+C yG+rC+++H++
  XP_022758063.1 51 LPDCVYYMRTGFCGYGNRCRYNHPR 75
                    589********************96 PP

2zf-CCCH39.21.2e-1295120227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+++tGtCk+G++CkF+H++
  XP_022758063.1  95 GEPACQFYLKTGTCKFGASCKFHHPK 120
                     5789********************96 PP

3zf-CCCH345.1e-11141166227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C ++++tG Ck+G +CkF+H++
  XP_022758063.1 141 GEKECLYYLKTGRCKFGITCKFHHPQ 166
                     7899********************97 PP

4zf-CCCH34.53.4e-11297323127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C +++rtG Ck+G +C+++H++
  XP_022758063.1 297 PGEPECEYYLRTGNCKFGLSCRYHHPR 323
                     5799*********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MEFYGRNPAW NGSQSSYQPE WRPVGPETGL EESMWQLSLK GTELYPERPG LPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGKY PERRGEPACQ FYLKTGTCKF GASCKFHHPK  120
HGGGSFSHVP LNIYAYPLRP GEKECLYYLK TGRCKFGITC KFHHPQPAGT SMPAPAPQFY  180
QPVQSPSVPV PEQYGGASTS VRVARAPLLP GSYVQGAYGP VLFPPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP  300
ECEYYLRTGN CKFGLSCRYH HPRDRVVPLT NCVLSPLGLP LRPATLSTTL INLASLRNRH  360
AWGACLFFLL AEWALQVWVH MQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-167C3H family protein