PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022757237.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 352aa    MW: 38611.5 Da    PI: 6.9711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022757237.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0891115126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f + GtC+y  +C+FaH+
  XP_022757237.1  91 FKTKLCCKFKA-GTCPYITNCNFAHS 115
                     69*********.*************8 PP

2zf-CCCH18.63.3e-06165190126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_022757237.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                     78888********************7 PP

3zf-CCCH437.3e-14231256126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_022757237.1 231 WKTRICNKWELTGYCPFGNKCHFAHG 256
                     8************************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MDYSRENVVH VISTNGPENW VPNSTDPSVW ATEEDYRVWN NQETSTDTAS NSSYDQRQPQ  60
SRSNSEQPPN KKPRNSQELN SRSKAIGKMF FKTKLCCKFK AGTCPYITNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEIGVL SEPREEFQIP SVGSSSFSGE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGAGGGGD GNGSNSKPSN WKTRICNKWE  240
LTGYCPFGNK CHFAHGVGEL HRNGGGLVDT EAKDSSATPS DSKQGGGVPS KTPADTVAAS  300
VSLVPLSDVY HLGVPSQRTL IVLQRPGQRT IQKWKGPDKI SRIYGDWIDD IE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-129C3H family protein