PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022757237.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 352aa MW: 38611.5 Da PI: 6.9711 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.6e-08 | 91 | 115 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f + GtC+y +C+FaH+ XP_022757237.1 91 FKTKLCCKFKA-GTCPYITNCNFAHS 115 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.6 | 3.3e-06 | 165 | 190 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022757237.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP | |||||||
3 | zf-CCCH | 43 | 7.3e-14 | 231 | 256 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022757237.1 231 WKTRICNKWELTGYCPFGNKCHFAHG 256 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence |
MDYSRENVVH VISTNGPENW VPNSTDPSVW ATEEDYRVWN NQETSTDTAS NSSYDQRQPQ 60 SRSNSEQPPN KKPRNSQELN SRSKAIGKMF FKTKLCCKFK AGTCPYITNC NFAHSIEELR 120 RPPPNWQEIV AAHEEEIGVL SEPREEFQIP SVGSSSFSGE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GGGGAGGGGD GNGSNSKPSN WKTRICNKWE 240 LTGYCPFGNK CHFAHGVGEL HRNGGGLVDT EAKDSSATPS DSKQGGGVPS KTPADTVAAS 300 VSLVPLSDVY HLGVPSQRTL IVLQRPGQRT IQKWKGPDKI SRIYGDWIDD IE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-129 | C3H family protein |