PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022756768.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 402aa MW: 45396.4 Da PI: 6.7923

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022756768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	2	26	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k+ lC+ffa G C Gd C F+H+ XP_022756768.1 2 PKRILCKFFAH-GACLKGDHCEFSHD 26 6999*6666.***********5 PP
2	zf-CCCH	25.5	2.3e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG+rC++ H+ XP_022756768.1 34 ICTYYQK-GICSYGNRCRYEHV 54 7****.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MPKRILCKFF AHGACLKGDH CEFSHDWKDP PNNICTYYQK GICSYGNRCR YEHVKASQSD 60 LSASSSSTVP HQSVISDSVP LGFSTTTFGG SVVLPAASAE FPGSRRALFP HTKQAWNLES 120 GHQGLLDNGI VMEPRSSNPV ERPICSFAAA GNCPRGEKCP HFHGDLCPSC GKHCLHPFRL 180 EEREEHIKMC EKKQKHLEAL KHSQEIECSV CLDRVLSKTT AAERKFGLLS ECDHPFCISC 240 IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYC TPEEKQEIVD SYKAKLRSID 300 CKHFNFGNGN CPFGTSCFYK HTVKPVSYAW KYHRPPPRRS NVMDMDAIFD FFKHLIAEDE 360 MNIFDAEDFE NDDLTSTEMA MSLMQLDFES SDSSSDEENC LY

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MPKRILCKFF AHGACLKGDH CEFSHDWKDP PNNICTYYQK GICSYGNRCR YEHVKASQSD  60
LSASSSSTVP HQSVISDSVP LGFSTTTFGG SVVLPAASAE FPGSRRALFP HTKQAWNLES  120
GHQGLLDNGI VMEPRSSNPV ERPICSFAAA GNCPRGEKCP HFHGDLCPSC GKHCLHPFRL  180
EEREEHIKMC EKKQKHLEAL KHSQEIECSV CLDRVLSKTT AAERKFGLLS ECDHPFCISC  240
IRNWRSSSPS SGMDVNTALR ACPICRKLSY FVIPSVIWYC TPEEKQEIVD SYKAKLRSID  300
CKHFNFGNGN CPFGTSCFYK HTVKPVSYAW KYHRPPPRRS NVMDMDAIFD FFKHLIAEDE  360
MNIFDAEDFE NDDLTSTEMA MSLMQLDFES SDSSSDEENC LY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-143	C3H family protein