PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022756367.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C2H2
Protein Properties Length: 534aa    MW: 57512.6 Da    PI: 8.9553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022756367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0580102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_022756367.1  80 FICEICNKGFQRDQNLELHRRGH 102
                     89******************988 PP

2zf-C2H212.40.00048156178123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  XP_022756367.1 156 WKCEKCSKRYAVQSDWKAHSKIC 178
                     58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    
MMKDLVEDES ISNLTSTSGE VSASSGTRIE TGTMYPQHSF PSTNQAAPPP KKKRNLPGNA  60
DPGSEVIALS PMTLLTTNRF ICEICNKGFQ RDQNLELHRR GHNLPWKLKQ RTNKEVRKKV  120
YVCPETTCVH HDPSRALGDL TAIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
TEYRCDCGTL FSRRDSFITH RAFCDALAKE SARATTAANP VLLSSVSHMT KLQTLPHNHA  240
LQARSMKREQ DHLFTARVPA ADSIPPWLAC PPGVGAGPGP PSINLSSSPL HLDNPVAQNE  300
NPSQNSGCNT LPPFQARTAS LHMSAAAILQ KAAQMDVTMS KPLQSPVGMQ RPHHHQAHMS  360
GTTGFIGSTS FPLSGSSLGL SAREELGSSF PYGLASFGNK AAVTSGFMEQ VIATNSTAGA  420
GAGAAPPDSL LHDMMSSLSS TSGFDGSSPF EQSFTGIWNT KGNSINFQET TNHLSKTIES  480
QLSRSDHEGR GSSSGSSKIG GNDGLTRDFL GLKALPHSDF PNLAGLNHLN SSSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119KLKQRTNKEVRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-111C2H2 family protein