PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022756229.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 634aa MW: 69296 Da PI: 5.7211

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022756229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	9e-08	231	251	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +far G+Ck G +C+F Hg XP_022756229.1 231 PCLYFAR-GFCKNGTSCRFVHG 251 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MDSYEATRIV FSRIQNLDPE NASKIMGYLL IQDHGEKEMI RLAFGPEALI HSLILKAKTH 60 LGLSISNPPT PSTPSSPSPF SSRLSPLSIP SSRLTNTNTT NGFEITNASS PSTNTWPPLS 120 RRPISPSSNS SLSYASIVNG TSNSANGSGS LPSIASCGNT CNDNEFIGDY QFQDHLSFLN 180 DSKPEDFYDP RLDLAMSPTG YADSPLHRRS FSVPGLCFGA EDVNSGVGWK PCLYFARGFC 240 KNGTSCRFVH GDCTDGAVLV GSPSKLNELE QCQGLLRSKA LQQQQQQQKL AAASQFMAGP 300 SFPYSKCVNF LLQQQNDSQR SAAAALMMGD ELHKFGRCRS ERNDFAAMGL GAVNPGSRQI 360 YLTFPADSTF KEEDVSSYFR KQQHQQQQLE RGEYSACSSP SALDSREPFD LHLGPRMFYN 420 TQEMLLRRKL EEQADLRQAI EFQERRLMNL QLLDLKNHYH SQFRHGLSTG SPIPSPTVSH 480 TPNDQALIFP ADGIDQEVPE ENGGSPVASV SILATAVDAD KQQEEVNPVC NHKSDNGNSI 540 TKEEKANIGE SDLPESLEHI LPDNLFASPK KSAGDHPTVF STASVEVDDK TTCPTTSSNS 600 NPSWANSSSL NMTSLKSCFL QMPRFSSGQG TIGM

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MDSYEATRIV FSRIQNLDPE NASKIMGYLL IQDHGEKEMI RLAFGPEALI HSLILKAKTH  60
LGLSISNPPT PSTPSSPSPF SSRLSPLSIP SSRLTNTNTT NGFEITNASS PSTNTWPPLS  120
RRPISPSSNS SLSYASIVNG TSNSANGSGS LPSIASCGNT CNDNEFIGDY QFQDHLSFLN  180
DSKPEDFYDP RLDLAMSPTG YADSPLHRRS FSVPGLCFGA EDVNSGVGWK PCLYFARGFC  240
KNGTSCRFVH GDCTDGAVLV GSPSKLNELE QCQGLLRSKA LQQQQQQQKL AAASQFMAGP  300
SFPYSKCVNF LLQQQNDSQR SAAAALMMGD ELHKFGRCRS ERNDFAAMGL GAVNPGSRQI  360
YLTFPADSTF KEEDVSSYFR KQQHQQQQLE RGEYSACSSP SALDSREPFD LHLGPRMFYN  420
TQEMLLRRKL EEQADLRQAI EFQERRLMNL QLLDLKNHYH SQFRHGLSTG SPIPSPTVSH  480
TPNDQALIFP ADGIDQEVPE ENGGSPVASV SILATAVDAD KQQEEVNPVC NHKSDNGNSI  540
TKEEKANIGE SDLPESLEHI LPDNLFASPK KSAGDHPTVF STASVEVDDK TTCPTTSSNS  600
NPSWANSSSL NMTSLKSCFL QMPRFSSGQG TIGM