PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022754929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24450.9 Da PI: 7.4517 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.5 | 1.5e-17 | 31 | 72 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + e k n +vtf+kRr+g++KKA+EL++L +a++ +i++s++ XP_022754929.1 31 QLEKKNNLHVTFTKRRTGLFKKASELCILSGAKIGIIVLSPS 72 568899**********************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MLNNQQKMLN KCCENKKPGK TKGRQRIEIK QLEKKNNLHV TFTKRRTGLF KKASELCILS 60 GAKIGIIVLS PSPREKPFCF GHPNIDTILD QYLNNIGNPT FDDQDYATTD LPAFEEINKQ 120 YEESLKELEK EKKRGKEMEE AKKVGNNVGF WWDIESVEGM GIEELEAYMK ATEELKDNLI 180 VRVNALTMAN VIETVAQANH GHGFGFAQNP GFGGTQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-29 | M-type_MADS family protein |