PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754882.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 576aa MW: 64195.3 Da PI: 6.92

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	291	305	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +GtC++G++C+F H+ XP_022754882.1 291 SGTCPRGEKCNFQHD 305 69************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG 60 RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS 120 VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG 180 ISDSSGSDST VSQLVAEIKP RYHIAEKQKF LHALSPIPSS AMSAAEISAK PPNTTLSPYT 240 LADQVDHPKE ATKRTSDSSL DSQYWRYDVS NKRQKHGNVD GNKVCFKFIS SGTCPRGEKC 300 NFQHDIDARE QFLRGVCLDF IIKGKCEKGP DCNFKHSLQD EGESYSRKRP GSGNSNANRS 360 KECWFCLSSP NVESHLVTSI GENFYCALAK GPLVQDHILI IPVEHSPNTL SLPADSEIEL 420 GKFQNSLKMY YKNQGKEAVF FEWISKRGTH ANLQAVPVPS SKAAALKDIF SLAAEKLGFE 480 FVTKRFNNNS EGRKWLRTQF DKNFSCFYVE LPEGSFLSHL VEENEKFPGQ FGREVLAGLL 540 NMADRADWRN CTIGKEEETK LAENFKKRFE VFDPSQ

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG  60
RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS  120
VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG  180
ISDSSGSDST VSQLVAEIKP RYHIAEKQKF LHALSPIPSS AMSAAEISAK PPNTTLSPYT  240
LADQVDHPKE ATKRTSDSSL DSQYWRYDVS NKRQKHGNVD GNKVCFKFIS SGTCPRGEKC  300
NFQHDIDARE QFLRGVCLDF IIKGKCEKGP DCNFKHSLQD EGESYSRKRP GSGNSNANRS  360
KECWFCLSSP NVESHLVTSI GENFYCALAK GPLVQDHILI IPVEHSPNTL SLPADSEIEL  420
GKFQNSLKMY YKNQGKEAVF FEWISKRGTH ANLQAVPVPS SKAAALKDIF SLAAEKLGFE  480
FVTKRFNNNS EGRKWLRTQF DKNFSCFYVE LPEGSFLSHL VEENEKFPGQ FGREVLAGLL  540
NMADRADWRN CTIGKEEETK LAENFKKRFE VFDPSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	8e-06	C3H family protein