PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754881.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 608aa MW: 67603.2 Da PI: 7.282

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.6e-06	323	337	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +GtC++G++C+F H+ XP_022754881.1 323 SGTCPRGEKCNFQHD 337 69************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG 60 RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS 120 VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG 180 ISDSSGSDST VSQLVAEIKP RYHIAGTKGA FYAREPYSNV DAVHVTRFLG LASVGNKEKQ 240 KFLHALSPIP SSAMSAAEIS AKPPNTTLSP YTLADQVDHP KEATKRTSDS SLDSQYWRYD 300 VSNKRQKHGN VDGNKVCFKF ISSGTCPRGE KCNFQHDIDA REQFLRGVCL DFIIKGKCEK 360 GPDCNFKHSL QDEGESYSRK RPGSGNSNAN RSKECWFCLS SPNVESHLVT SIGENFYCAL 420 AKGPLVQDHI LIIPVEHSPN TLSLPADSEI ELGKFQNSLK MYYKNQGKEA VFFEWISKRG 480 THANLQAVPV PSSKAAALKD IFSLAAEKLG FEFVTKRFNN NSEGRKWLRT QFDKNFSCFY 540 VELPEGSFLS HLVEENEKFP GQFGREVLAG LLNMADRADW RNCTIGKEEE TKLAENFKKR 600 FEVFDPSQ

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG  60
RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS  120
VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG  180
ISDSSGSDST VSQLVAEIKP RYHIAGTKGA FYAREPYSNV DAVHVTRFLG LASVGNKEKQ  240
KFLHALSPIP SSAMSAAEIS AKPPNTTLSP YTLADQVDHP KEATKRTSDS SLDSQYWRYD  300
VSNKRQKHGN VDGNKVCFKF ISSGTCPRGE KCNFQHDIDA REQFLRGVCL DFIIKGKCEK  360
GPDCNFKHSL QDEGESYSRK RPGSGNSNAN RSKECWFCLS SPNVESHLVT SIGENFYCAL  420
AKGPLVQDHI LIIPVEHSPN TLSLPADSEI ELGKFQNSLK MYYKNQGKEA VFFEWISKRG  480
THANLQAVPV PSSKAAALKD IFSLAAEKLG FEFVTKRFNN NSEGRKWLRT QFDKNFSCFY  540
VELPEGSFLS HLVEENEKFP GQFGREVLAG LLNMADRADW RNCTIGKEEE TKLAENFKKR  600
FEVFDPSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.2	9e-06	C3H family protein