PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754870.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 973aa MW: 105665 Da PI: 6.8357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	508	528	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C +++ G+C +Gd C F+H XP_022754870.1 508 PCINYMTKGFCGRGDDCLFSH 528 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence
MEEPQEPGPG VGAPFSFPPH RRSHLRSGTY RNLVRLISLC YGDSPLATAP PIIPLPQTPE 60 NGSNQGEPGG DDARDPGGSI VLDNREPANM VAQEGKAVDG GFEGAVFRDR GFSDTQMVID 120 EIEQIMQVEG QDLLNQNDLM VNSDMEATRF RDGEIGREQM LMTELENIMK GNEDCDKSSN 180 CLTTSFDWNG GDNCVGVSVT NQEEHDDHPP VVMEESGTVG QPQVDMEGGN TKIIEAFGFS 240 SDKSMTVEVS KSSEKVEDQS SLSKTNATCE KIEIQQKEME LEKFVCSNDR LASPGHMVED 300 GELEEGEIFG DIQLVNDSVD TLLDNAVVSE KKVEEKQVSV GAFDDKHLHC NEESKDDDKD 360 PEFTSFNTNV ARIANRVTEG ELEGSERDQM VFELGTTPRK EGSGNIQKQI GSSNQAIKAN 420 KKKNKRKKRA ERNRQLGVKR LKLQTVLKPK TVTYCRHYLK GRCYEGEKCK YSHDTVPLTK 480 SQPCSHFARH SCLKGDECPF DHQLSKYPCI NYMTKGFCGR GDDCLFSHKM SPAGDGASLS 540 NAHELQPKPS LQGDSDMRLN IGRTSHKNVD ASSCSVGAVS HKSKKQIVAE TPTKTPDLAC 600 KGVNSLFVSK SSMVESSKLN QGSSSQKINE SGRVGIQSIQ STLGVNSPFA SKPSVADSSK 660 FSQGRSSLKM NESGRLGIQA NQSELGTIQN VNDSPKRKTE VVPRGINFLS FGKSSLEDSN 720 SKVSFALNRA DGYKQHPSEN EGNRGKLSNQ TTQSTSSTDQ KKTHPVLLPP GINLLSLGKP 780 GISGSGLPCS SDNVNNGSLQ KSNYAADKQH NSSAISSKLS ISPQTSGQFS EWLAHKNAPN 840 SAQKSLISTL AVAKKFDNTK GRSVHESQHM SDKQYNSNAN PWKMPASSLA TSQSSEKMTP 900 KNTPNSAQKA LMSTLAVAAK LESGMMKNQS PVSSAVNSEI RDGRIGEGSK TDSAKTSKIL 960 DILCSLSSKI KHT

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence

MEEPQEPGPG VGAPFSFPPH RRSHLRSGTY RNLVRLISLC YGDSPLATAP PIIPLPQTPE  60
NGSNQGEPGG DDARDPGGSI VLDNREPANM VAQEGKAVDG GFEGAVFRDR GFSDTQMVID  120
EIEQIMQVEG QDLLNQNDLM VNSDMEATRF RDGEIGREQM LMTELENIMK GNEDCDKSSN  180
CLTTSFDWNG GDNCVGVSVT NQEEHDDHPP VVMEESGTVG QPQVDMEGGN TKIIEAFGFS  240
SDKSMTVEVS KSSEKVEDQS SLSKTNATCE KIEIQQKEME LEKFVCSNDR LASPGHMVED  300
GELEEGEIFG DIQLVNDSVD TLLDNAVVSE KKVEEKQVSV GAFDDKHLHC NEESKDDDKD  360
PEFTSFNTNV ARIANRVTEG ELEGSERDQM VFELGTTPRK EGSGNIQKQI GSSNQAIKAN  420
KKKNKRKKRA ERNRQLGVKR LKLQTVLKPK TVTYCRHYLK GRCYEGEKCK YSHDTVPLTK  480
SQPCSHFARH SCLKGDECPF DHQLSKYPCI NYMTKGFCGR GDDCLFSHKM SPAGDGASLS  540
NAHELQPKPS LQGDSDMRLN IGRTSHKNVD ASSCSVGAVS HKSKKQIVAE TPTKTPDLAC  600
KGVNSLFVSK SSMVESSKLN QGSSSQKINE SGRVGIQSIQ STLGVNSPFA SKPSVADSSK  660
FSQGRSSLKM NESGRLGIQA NQSELGTIQN VNDSPKRKTE VVPRGINFLS FGKSSLEDSN  720
SKVSFALNRA DGYKQHPSEN EGNRGKLSNQ TTQSTSSTDQ KKTHPVLLPP GINLLSLGKP  780
GISGSGLPCS SDNVNNGSLQ KSNYAADKQH NSSAISSKLS ISPQTSGQFS EWLAHKNAPN  840
SAQKSLISTL AVAKKFDNTK GRSVHESQHM SDKQYNSNAN PWKMPASSLA TSQSSEKMTP  900
KNTPNSAQKA LMSTLAVAAK LESGMMKNQS PVSSAVNSEI RDGRIGEGSK TDSAKTSKIL  960
DILCSLSSKI KHT