PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754082.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C2H2

Protein Properties

Length: 462aa MW: 51646.8 Da PI: 9.4143

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+k+F++ L Hir H XP_022754082.1 45 HICPVCSKVFTSGKALGGHIRIH 67 68*******************99 PP
2	zf-C2H2	12.6	0.00042	122	143	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C+k F++ +L H+++H XP_022754082.1 122 SCCICKKDFRSMKSLFGHMKNH 143 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MDDQAADQVT NNMEKESVPI EISDLPNKLL LKLEISKTLK RCGQHICPVC SKVFTSGKAL 60 GGHIRIHMKV SKNGLHRKIS KLQPRTIHRA KAKQRISKMV SPKATDGADL PLNDQEGNEK 120 VSCCICKKDF RSMKSLFGHM KNHPERSWRG IRPPPSDKNS CCSSVSENDE ALEVDQISCA 180 KEKRSVTGSD LLKSLPKWTN TAKRYGKFTS DENEIPQAAY CLMMLAQGDS FDLGQSSVGY 240 QRKCSATDKL TIDKTRSWGL ANKASEEKKR SNNALGKEIG EEKGKAKLKT QSDQRRVPSE 300 CKRGDSYKPA EENKMGKSLA KELDCDKIVD RKTIVRENKM KANYTDAKII ENNRWFDQFQ 360 KSPMKTGEEE GDPSTMEGRY RGKIFPSRQT PCFYPKNPSG GLLEAPLNET APPVEGKHPY 420 SKTQFLKTVN QAAEGSQVCS LKMLDFDLNE PYVPLDGETS GT

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MDDQAADQVT NNMEKESVPI EISDLPNKLL LKLEISKTLK RCGQHICPVC SKVFTSGKAL  60
GGHIRIHMKV SKNGLHRKIS KLQPRTIHRA KAKQRISKMV SPKATDGADL PLNDQEGNEK  120
VSCCICKKDF RSMKSLFGHM KNHPERSWRG IRPPPSDKNS CCSSVSENDE ALEVDQISCA  180
KEKRSVTGSD LLKSLPKWTN TAKRYGKFTS DENEIPQAAY CLMMLAQGDS FDLGQSSVGY  240
QRKCSATDKL TIDKTRSWGL ANKASEEKKR SNNALGKEIG EEKGKAKLKT QSDQRRVPSE  300
CKRGDSYKPA EENKMGKSLA KELDCDKIVD RKTIVRENKM KANYTDAKII ENNRWFDQFQ  360
KSPMKTGEEE GDPSTMEGRY RGKIFPSRQT PCFYPKNPSG GLLEAPLNET APPVEGKHPY  420
SKTQFLKTVN QAAEGSQVCS LKMLDFDLNE PYVPLDGETS GT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	42	TLKRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	3e-22	C2H2 family protein