PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022752640.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 709aa MW: 76980.6 Da PI: 5.8454

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022752640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.7	3.5e-07	279	299	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd+C +aHg XP_022752640.1 279 PCPEFRK-GTCRQGDNCEYAHG 299 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MCTGPKRKPT QTGFMMEGES QIKDGLPLKL SVLLELSASN DLTGFKSAIE EEGLDIDEPS 60 LWYGRRMGSK MMVFEERTPL LIASMFGSKD VVNYIIESGR VDVNRACGSD GATALHCAAG 120 GGSFDSAEVV KILLEASADI NSVDANGNRP GDLFAPACNS AFSLRKKTLE ALLKGSGSVG 180 EIEGLPAQVG IEMEGPEQLE NSIPRALRDG IEKKEYPVDL TLPDIKNGIY GTDEFRMYTF 240 KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI 300 FECWLHPAQY RTRLCKDETN CNRRVCFFAH KPEELRPLYA STGSAVPSPR SYSATGSSLD 360 MGSLSPFALG SPSVMIPPTS TPPLTPTGTS SPMGGAMWPN QSNIIPPTLQ LPGSRLKTAL 420 SARDMDLDVD LLGLESHRRR HQQQLIDEIS CLSSPTSWKN PLSAASAFSA SGDRPGELNR 480 FSGVKPTNLE DIFGSLDTTI LPQLQGISLD AAARQLQSPT GVQMHQNIKQ QLRASYPTNL 540 ASSPVRASPS FGIEPSGPTA AAVLSSRSAA FAKRSQSFIE RTAINRHSGF TSPASSASAM 600 LSNRSDWGSP DGKLDWGIQG EELNKLRKSS PFGLRSSGGN LANAGRSMSP ATDEPDVSWV 660 QSLVKDTPSA GQFSFEDEQQ QQCHLDTTGA EMLPAWVEQL YMEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MCTGPKRKPT QTGFMMEGES QIKDGLPLKL SVLLELSASN DLTGFKSAIE EEGLDIDEPS  60
LWYGRRMGSK MMVFEERTPL LIASMFGSKD VVNYIIESGR VDVNRACGSD GATALHCAAG  120
GGSFDSAEVV KILLEASADI NSVDANGNRP GDLFAPACNS AFSLRKKTLE ALLKGSGSVG  180
EIEGLPAQVG IEMEGPEQLE NSIPRALRDG IEKKEYPVDL TLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGTCRQ GDNCEYAHGI  300
FECWLHPAQY RTRLCKDETN CNRRVCFFAH KPEELRPLYA STGSAVPSPR SYSATGSSLD  360
MGSLSPFALG SPSVMIPPTS TPPLTPTGTS SPMGGAMWPN QSNIIPPTLQ LPGSRLKTAL  420
SARDMDLDVD LLGLESHRRR HQQQLIDEIS CLSSPTSWKN PLSAASAFSA SGDRPGELNR  480
FSGVKPTNLE DIFGSLDTTI LPQLQGISLD AAARQLQSPT GVQMHQNIKQ QLRASYPTNL  540
ASSPVRASPS FGIEPSGPTA AAVLSSRSAA FAKRSQSFIE RTAINRHSGF TSPASSASAM  600
LSNRSDWGSP DGKLDWGIQG EELNKLRKSS PFGLRSSGGN LANAGRSMSP ATDEPDVSWV  660
QSLVKDTPSA GQFSFEDEQQ QQCHLDTTGA EMLPAWVEQL YMEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein