PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022751839.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 462aa MW: 52118 Da PI: 6.768

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022751839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26	1.9e-08	21	59	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k++ ++C+ ++ lC C ++ H+ H XP_022751839.1 21 LCDFCNSKPAVFYCRADSAKLCLFCDQQVHSAnalsikH 59 7*****************************655555555 PP
2	zf-B_box	28.3	3.7e-09	62	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++C+ ++ k++++ C +++ +lC+dC ++H++ H+++p+ XP_022751839.1 62 SQICDGCKTKPASFVCSNDNLMLCQDCDWNSHNSncsvsalHERSPV 108 579*****************************889999999998875 PP
3	CCT	61.4	3e-21	412	456	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a+lRYkeK+k+R+++K+irYesRKa+A++R+R KGrFvk++e XP_022751839.1 412 RGNAMLRYKEKKKHRRYDKQIRYESRKARADTRKRFKGRFVKASE 456 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MLILMMDKIC KSKPRRSVLF LCDFCNSKPA VFYCRADSAK LCLFCDQQVH SANALSIKHI 60 RSQICDGCKT KPASFVCSND NLMLCQDCDW NSHNSNCSVS ALHERSPVEG FSGRPSVIEL 120 ASIFGIDLKP NDLMNLIPEF SIYEQELMNL EDFMVPNENS SVSSALLSSV KVNHEVYRQL 180 VEMAKRDLVR IRGDAAELGP GTPPNGSFEQ GNLLSFEVEN GDDEELLHRQ TPFISLLMLH 240 NNELLRKHAF VANEGELMWD CKSSYQASQI WDFQSGRSRD CEESGPEDAG CINSINNHAF 300 VIKNYDGHAK GSSLSKTSVF EDLYEMSHSM RCQDALSRNN CCNQPFSSYK PTTEESNDVP 360 LVGSSSDFKV AEPLKCDGTR FVQVMEHHIL AGSDSMNEGK AKVDAELLAQ NRGNAMLRYK 420 EKKKHRRYDK QIRYESRKAR ADTRKRFKGR FVKASEAHDV KV

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MLILMMDKIC KSKPRRSVLF LCDFCNSKPA VFYCRADSAK LCLFCDQQVH SANALSIKHI  60
RSQICDGCKT KPASFVCSND NLMLCQDCDW NSHNSNCSVS ALHERSPVEG FSGRPSVIEL  120
ASIFGIDLKP NDLMNLIPEF SIYEQELMNL EDFMVPNENS SVSSALLSSV KVNHEVYRQL  180
VEMAKRDLVR IRGDAAELGP GTPPNGSFEQ GNLLSFEVEN GDDEELLHRQ TPFISLLMLH  240
NNELLRKHAF VANEGELMWD CKSSYQASQI WDFQSGRSRD CEESGPEDAG CINSINNHAF  300
VIKNYDGHAK GSSLSKTSVF EDLYEMSHSM RCQDALSRNN CCNQPFSSYK PTTEESNDVP  360
LVGSSSDFKV AEPLKCDGTR FVQVMEHHIL AGSDSMNEGK AKVDAELLAQ NRGNAMLRYK  420
EKKKHRRYDK QIRYESRKAR ADTRKRFKGR FVKASEAHDV KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	7e-75	CO-like family protein