PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022751435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 1470aa MW: 162364 Da PI: 5.3424 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 1447 | 1470 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C+F H+ XP_022751435.1 1447 GQRVCK-FYESGYCKKGASCSFWHP 1470 6799**.8899***********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1470 aa Download sequence |
MCRKITKTKK KLFAEKYFYY VFILLIIFFD YFMENCEQVE SNTALYKPCL QDNGGGGGGG 60 CGDVGNNSDS LNRDSLRGVE FMSVDQCQKI PEMDDSQLVG NADVAVRVHA VDTAEMGAGN 120 GVKVVEMSEG KRRRGRPPRN QVRIMSPSAP PPQRKKKDEE DVCFICFDGG SLVLCDRRGC 180 PKAYHPACIK RDESFFKSKA KWNCGWHICS TCQKASYYMC YTCTYSLCKN CTKDADYMNV 240 RGNKGFCGMC MRTIMLIENS ALGNKEMVQV DFDDQTSWEY LFKVYWIFLK EKLSLSLDEL 300 SKAKNPWKEI AIMGPKGESS GELNNGSNSK AANMDKSFGD PGASYSKRRK TMKEQKFLNK 360 VESLEAEKWG VAKGKPLLEG TNWATKELLE FVAHMKNGDI SVLSLFDVQA LLLQYITRSN 420 LHDPCQKSQF VCDSRLIKLF GKERVDHFEM LRLLESHFFV QDPSRAIDTI RGLGTEAVAT 480 QLAVDGNNYS QTIIANDERR KTRKKVDEKG QKANPDKSAA IDVHNMNLIY LKRSLMENLI 540 DDADKFNDKV VGSFVRINIP GSDQKQDTYR LVQVIGTSKV AEPYKIGERT VDVMLEILNL 600 DKKEVVSIGG ISNQEFSEDE CQRLCQSIKC GPTKWFTVGE IQEKAMALQA VRVNDWLESE 660 ILRVKNLLDQ AREKGHTKEL RKCVEKLQLL NSPDERQCRL HEIPDVHSDP NMILYHESEE 720 VAGELDEKKK ENNMKPRNSG FGMKEKEPAF PLKGGDGLND IGSRETSEPL HSTEMELSVN 780 NIETDKIWHY QDPLGKIQGP FTMTMLRKWS MSDLFPPDLR IWRVGEKQDD STLLTDALDG 840 WYSQAQQFFH NSCVPTEDVR IASNDGCQNM DGDVRGSRDL NVNQMESKQV EGSLNSMQND 900 TSGHCCGNKE SAKSKEFGSQ SSCTALVDIV NSNAVQTGSP LPHWESVKVD NYFPGQPQVT 960 SSLTSSTLSG KPCETQSHQV SGGHGVERWD CGSINMNENL NKTSEGQIIA GNVKQDYSEG 1020 KSGKSCGQSW RSPPLNDASN GWDSNSGLIS LARALEVAEH NQDIDFRDLP TSTSKLNHED 1080 SKGQAAKNKQ PLSSNVPQKD SGPSWSTASS LVGNGPQLPE VAGEWGGYSS TPVKTSVEEW 1140 DSDLVPESSL KPTDLGSDHA ATPTSGSGQL THSSPTDPAN NPSSWDPIVP EPNEYSLGDE 1200 SVSDLLAEVE AMESLNGLAS PTLILRGDGE LAQGSEPDCF SPVGGLSPAP DPGKSDALSS 1260 TNDLQMPCQS TVINELFGVS QSELLDTQKS SGGHSSTSAE MDEDKRPSDV SVNQYEAGSD 1320 IQPPAPPVTT WDMATEDTAW RAGPETSGTN WAAVQGNPNF SWGGLGQGTT NVSWGTGQGT 1380 FQENGSFNSG TSSGNPPYWG NQQRYVGPRD RDFHGRDSSF GRGRSSWNRH SWHGGHNGVG 1440 SLRPPKGQRV CKFYESGYCK KGASCSFWHP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 157 | KRRRGRPPRNQVRIMSPSAPPPQRKKK |
2 | 347 | 373 | KRRRGRPPRNQVRIMSPSAPPPQRKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | C3H family protein |