PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022751435.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 1470aa    MW: 162364 Da    PI: 5.3424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022751435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-0614471470226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      +++ C+ f+++G+Ck G++C+F H+
  XP_022751435.1 1447 GQRVCK-FYESGYCKKGASCSFWHP 1470
                      6799**.8899***********997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1470 aa     Download sequence    
MCRKITKTKK KLFAEKYFYY VFILLIIFFD YFMENCEQVE SNTALYKPCL QDNGGGGGGG  60
CGDVGNNSDS LNRDSLRGVE FMSVDQCQKI PEMDDSQLVG NADVAVRVHA VDTAEMGAGN  120
GVKVVEMSEG KRRRGRPPRN QVRIMSPSAP PPQRKKKDEE DVCFICFDGG SLVLCDRRGC  180
PKAYHPACIK RDESFFKSKA KWNCGWHICS TCQKASYYMC YTCTYSLCKN CTKDADYMNV  240
RGNKGFCGMC MRTIMLIENS ALGNKEMVQV DFDDQTSWEY LFKVYWIFLK EKLSLSLDEL  300
SKAKNPWKEI AIMGPKGESS GELNNGSNSK AANMDKSFGD PGASYSKRRK TMKEQKFLNK  360
VESLEAEKWG VAKGKPLLEG TNWATKELLE FVAHMKNGDI SVLSLFDVQA LLLQYITRSN  420
LHDPCQKSQF VCDSRLIKLF GKERVDHFEM LRLLESHFFV QDPSRAIDTI RGLGTEAVAT  480
QLAVDGNNYS QTIIANDERR KTRKKVDEKG QKANPDKSAA IDVHNMNLIY LKRSLMENLI  540
DDADKFNDKV VGSFVRINIP GSDQKQDTYR LVQVIGTSKV AEPYKIGERT VDVMLEILNL  600
DKKEVVSIGG ISNQEFSEDE CQRLCQSIKC GPTKWFTVGE IQEKAMALQA VRVNDWLESE  660
ILRVKNLLDQ AREKGHTKEL RKCVEKLQLL NSPDERQCRL HEIPDVHSDP NMILYHESEE  720
VAGELDEKKK ENNMKPRNSG FGMKEKEPAF PLKGGDGLND IGSRETSEPL HSTEMELSVN  780
NIETDKIWHY QDPLGKIQGP FTMTMLRKWS MSDLFPPDLR IWRVGEKQDD STLLTDALDG  840
WYSQAQQFFH NSCVPTEDVR IASNDGCQNM DGDVRGSRDL NVNQMESKQV EGSLNSMQND  900
TSGHCCGNKE SAKSKEFGSQ SSCTALVDIV NSNAVQTGSP LPHWESVKVD NYFPGQPQVT  960
SSLTSSTLSG KPCETQSHQV SGGHGVERWD CGSINMNENL NKTSEGQIIA GNVKQDYSEG  1020
KSGKSCGQSW RSPPLNDASN GWDSNSGLIS LARALEVAEH NQDIDFRDLP TSTSKLNHED  1080
SKGQAAKNKQ PLSSNVPQKD SGPSWSTASS LVGNGPQLPE VAGEWGGYSS TPVKTSVEEW  1140
DSDLVPESSL KPTDLGSDHA ATPTSGSGQL THSSPTDPAN NPSSWDPIVP EPNEYSLGDE  1200
SVSDLLAEVE AMESLNGLAS PTLILRGDGE LAQGSEPDCF SPVGGLSPAP DPGKSDALSS  1260
TNDLQMPCQS TVINELFGVS QSELLDTQKS SGGHSSTSAE MDEDKRPSDV SVNQYEAGSD  1320
IQPPAPPVTT WDMATEDTAW RAGPETSGTN WAAVQGNPNF SWGGLGQGTT NVSWGTGQGT  1380
FQENGSFNSG TSSGNPPYWG NQQRYVGPRD RDFHGRDSSF GRGRSSWNRH SWHGGHNGVG  1440
SLRPPKGQRV CKFYESGYCK KGASCSFWHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131157KRRRGRPPRNQVRIMSPSAPPPQRKKK
2347373KRRRGRPPRNQVRIMSPSAPPPQRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0C3H family protein