PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022750950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 947aa    MW: 105879 Da    PI: 8.888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022750950.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-07186207325
                     S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                     t lC++f+    C++G++C+F H
  XP_022750950.1 186 TQLCKDFMD-RRCRRGSQCQFLH 207
                     78*******.************* PP

2zf-CCCH19.61.7e-06311332426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++fa+ G C+ G  C+F+H 
  XP_022750950.1 311 APCKYFAA-GNCRNGKYCRFSHH 332
                     69**9999.*************6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    
MSGSRKRSSK WDSKEERQYS LENIRDTAWP VKAGVSFHDR ESEHGYFSPE VGRNGNKCSV  60
VKASDIMKSK HELPSRESLP GSRGGKKDHN INVDCVKYWK TMTPLDGDET YKMEMSPGLD  120
DWRQQNHRHS PKTDWSSYHS FTHRSRSGSR SWSRSFSRSR SRSPVCGIRQ QSGFHERTRS  180
RSGVSTQLCK DFMDRRCRRG SQCQFLHQDI QSHENGWDNR QKRGADSKYF TPNDGKEYLI  240
KSGRSTDRYT DYLKGNYRRG VSCRFSHDGA SSGFSRVSRN EVSRERENNK RNRGTTPERD  300
GEREARRSND APCKYFAAGN CRNGKYCRFS HHVQACASPE RRSRGDKGGW GQSSVRVDKF  360
RDGAKLRDAD VSFNVEKTLA GPKWSDADVS NDVDKSWTAL KWSDIGPYSG ATKLSKDTNG  420
KMGASERRFS DWSINDRWQH DYDVRGKNSE TNVDYKTVDI DKDEAILRTI ESASVSVGVS  480
EPRGAEESLG DMEMSPDWNY RIHSSVKEYS HSSKSTPADS SLPAHENITV EASGQVPDGV  540
AILQPMLTEK SNFQQDHMMR GSSSVTLPCD SNAVSRNSSI SHIDLNFSTN ILPMPSFDQP  600
GPSSSSLPYA NLNAIVQSQV VIPSNEINMK GTQDSLLFQE EKPSNKLNIG DTKTLHGSSG  660
IQSTQSMVSN EQLTQLTNLS ASLAQLFGKR QQLPLPHVAL DAHDAMQVTF VNSGGPVEPD  720
SVPTVQPDQN IKLPKQYDPI SDSIEPVKTQ GTNTKPLGIS EPPVAQKNAA DGKPELWTNK  780
LLASSFVGST NGGDFHNDHG SKKQPDFDSC KPNQLEPVAS SEVTKENEVV EETKKAEEEN  840
KNGPSENIDA DDRTDEGKKI KDGKGIRAFK FALVEFVKDL LKPTWKEGQI GKEAYKNIVK  900
KVVDKVTATM QGTNIPQTPE KIEQYLSFSK SKLSKLVQAY VEKIQKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.16e-12C3H family protein