PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022750949.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 943aa MW: 105407 Da PI: 8.8876

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022750949.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	182	203	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f+ C++G++C+F H XP_022750949.1 182 TQLCKDFMD-RRCRRGSQCQFLH 203 78*****.*********** PP
2	zf-CCCH	19.6	1.7e-06	307	328	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G C+F+H XP_022750949.1 307 APCKYFAA-GNCRNGKYCRFSHH 328 699999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence
MSGSRKRSSK WDSKEERQYS LENIRDTAWP VKAGVSFHDR ESEHGYFSPE VGRNGNKCSV 60 VKASDIMKSK HELPSRESLP GSRGGKKDHN INVDCVKYWK TMTPLDGDET YKMEMSPGLD 120 DWRQQNHRHS PKTDWSSYHR SRSGSRSWSR SFSRSRSRSP VCGIRQQSGF HERTRSRSGV 180 STQLCKDFMD RRCRRGSQCQ FLHQDIQSHE NGWDNRQKRG ADSKYFTPND GKEYLIKSGR 240 STDRYTDYLK GNYRRGVSCR FSHDGASSGF SRVSRNEVSR ERENNKRNRG TTPERDGERE 300 ARRSNDAPCK YFAAGNCRNG KYCRFSHHVQ ACASPERRSR GDKGGWGQSS VRVDKFRDGA 360 KLRDADVSFN VEKTLAGPKW SDADVSNDVD KSWTALKWSD IGPYSGATKL SKDTNGKMGA 420 SERRFSDWSI NDRWQHDYDV RGKNSETNVD YKTVDIDKDE AILRTIESAS VSVGVSEPRG 480 AEESLGDMEM SPDWNYRIHS SVKEYSHSSK STPADSSLPA HENITVEASG QVPDGVAILQ 540 PMLTEKSNFQ QDHMMRGSSS VTLPCDSNAV SRNSSISHID LNFSTNILPM PSFDQPGPSS 600 SSLPYANLNA IVQSQVVIPS NEINMKGTQD SLLFQEEKPS NKLNIGDTKT LHGSSGIQST 660 QSMVSNEQLT QLTNLSASLA QLFGKRQQLP LPHVALDAHD AMQVTFVNSG GPVEPDSVPT 720 VQPDQNIKLP KQYDPISDSI EPVKTQGTNT KPLGISEPPV AQKNAADGKP ELWTNKLLAS 780 SFVGSTNGGD FHNDHGSKKQ PDFDSCKPNQ LEPVASSEVT KENEVVEETK KAEEENKNGP 840 SENIDADDRT DEGKKIKDGK GIRAFKFALV EFVKDLLKPT WKEGQIGKEA YKNIVKKVVD 900 KVTATMQGTN IPQTPEKIEQ YLSFSKSKLS KLVQAYVEKI QKS

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence

MSGSRKRSSK WDSKEERQYS LENIRDTAWP VKAGVSFHDR ESEHGYFSPE VGRNGNKCSV  60
VKASDIMKSK HELPSRESLP GSRGGKKDHN INVDCVKYWK TMTPLDGDET YKMEMSPGLD  120
DWRQQNHRHS PKTDWSSYHR SRSGSRSWSR SFSRSRSRSP VCGIRQQSGF HERTRSRSGV  180
STQLCKDFMD RRCRRGSQCQ FLHQDIQSHE NGWDNRQKRG ADSKYFTPND GKEYLIKSGR  240
STDRYTDYLK GNYRRGVSCR FSHDGASSGF SRVSRNEVSR ERENNKRNRG TTPERDGERE  300
ARRSNDAPCK YFAAGNCRNG KYCRFSHHVQ ACASPERRSR GDKGGWGQSS VRVDKFRDGA  360
KLRDADVSFN VEKTLAGPKW SDADVSNDVD KSWTALKWSD IGPYSGATKL SKDTNGKMGA  420
SERRFSDWSI NDRWQHDYDV RGKNSETNVD YKTVDIDKDE AILRTIESAS VSVGVSEPRG  480
AEESLGDMEM SPDWNYRIHS SVKEYSHSSK STPADSSLPA HENITVEASG QVPDGVAILQ  540
PMLTEKSNFQ QDHMMRGSSS VTLPCDSNAV SRNSSISHID LNFSTNILPM PSFDQPGPSS  600
SSLPYANLNA IVQSQVVIPS NEINMKGTQD SLLFQEEKPS NKLNIGDTKT LHGSSGIQST  660
QSMVSNEQLT QLTNLSASLA QLFGKRQQLP LPHVALDAHD AMQVTFVNSG GPVEPDSVPT  720
VQPDQNIKLP KQYDPISDSI EPVKTQGTNT KPLGISEPPV AQKNAADGKP ELWTNKLLAS  780
SFVGSTNGGD FHNDHGSKKQ PDFDSCKPNQ LEPVASSEVT KENEVVEETK KAEEENKNGP  840
SENIDADDRT DEGKKIKDGK GIRAFKFALV EFVKDLLKPT WKEGQIGKEA YKNIVKKVVD  900
KVTATMQGTN IPQTPEKIEQ YLSFSKSKLS KLVQAYVEKI QKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-12	C3H family protein