PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022749304.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 377aa    MW: 40873.7 Da    PI: 8.435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022749304.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-117195327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C+ff++t  Ck+G++CkF+H++
  XP_022749304.1 71 EPDCPFFLKTQRCKFGSKCKFNHPK 95
                    589********************96 PP

2zf-CCCH39.21.2e-12118142327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G++CkF+H++
  XP_022749304.1 118 EPPCAFYMKTGKCKFGATCKFHHPK 142
                     79*********************96 PP

3zf-CCCH38.61.7e-12189212326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG CkyG++C+++H+
  XP_022749304.1 189 EVDCPFYLKTGSCKYGSSCRYNHP 212
                     579********************9 PP

4zf-CCCH443.7e-14280304226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C+++++tG+Ck+GdrCkF+H+
  XP_022749304.1 280 GQSECDYYMKTGECKFGDRCKFHHP 304
                     7899********************9 PP

5zf-CCCH39.97.3e-13336357627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++CkF H+p
  XP_022749304.1 336 CPYYMKTGTCKYGATCKFDHPP 357
                     ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MGTQAHHLPP LSLSVIWTPT PLLIHISFTT SSPGLPQSTS LPPLLPPHPS NAPLKVPLLA  60
TGESLPERAE EPDCPFFLKT QRCKFGSKCK FNHPKDKLAT SGDSENTQVS VLPDRPSEPP  120
CAFYMKTGKC KFGATCKFHH PKDIQIPSFG QGNTKCEQIE AVTKIGGATV DLKPAQFLNS  180
KGLPIRLDEV DCPFYLKTGS CKYGSSCRYN HPDRNAFNPP AAAIGHSLIA SANNLNIGVV  240
TPASSLYQTI DPRLSQTTLL AQQTLPTMGV APTVYPQRPG QSECDYYMKT GECKFGDRCK  300
FHHPVDRLAS TTNETSQQAV KLTLAGFPRR EGSVHCPYYM KTGTCKYGAT CKFDHPPPGE  360
VMAMAAAQGT PTTIGQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-136C3H family protein