PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022749304.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 377aa MW: 40873.7 Da PI: 8.435 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.9e-11 | 71 | 95 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ff++t Ck+G++CkF+H++ XP_022749304.1 71 EPDCPFFLKTQRCKFGSKCKFNHPK 95 589********************96 PP | |||||||
2 | zf-CCCH | 39.2 | 1.2e-12 | 118 | 142 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_022749304.1 118 EPPCAFYMKTGKCKFGATCKFHHPK 142 79*********************96 PP | |||||||
3 | zf-CCCH | 38.6 | 1.7e-12 | 189 | 212 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_022749304.1 189 EVDCPFYLKTGSCKYGSSCRYNHP 212 579********************9 PP | |||||||
4 | zf-CCCH | 44 | 3.7e-14 | 280 | 304 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+GdrCkF+H+ XP_022749304.1 280 GQSECDYYMKTGECKFGDRCKFHHP 304 7899********************9 PP | |||||||
5 | zf-CCCH | 39.9 | 7.3e-13 | 336 | 357 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_022749304.1 336 CPYYMKTGTCKYGATCKFDHPP 357 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence |
MGTQAHHLPP LSLSVIWTPT PLLIHISFTT SSPGLPQSTS LPPLLPPHPS NAPLKVPLLA 60 TGESLPERAE EPDCPFFLKT QRCKFGSKCK FNHPKDKLAT SGDSENTQVS VLPDRPSEPP 120 CAFYMKTGKC KFGATCKFHH PKDIQIPSFG QGNTKCEQIE AVTKIGGATV DLKPAQFLNS 180 KGLPIRLDEV DCPFYLKTGS CKYGSSCRYN HPDRNAFNPP AAAIGHSLIA SANNLNIGVV 240 TPASSLYQTI DPRLSQTTLL AQQTLPTMGV APTVYPQRPG QSECDYYMKT GECKFGDRCK 300 FHHPVDRLAS TTNETSQQAV KLTLAGFPRR EGSVHCPYYM KTGTCKYGAT CKFDHPPPGE 360 VMAMAAAQGT PTTIGQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-136 | C3H family protein |