PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022749302.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 447aa    MW: 49246.8 Da    PI: 8.3496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022749302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.76.2e-11106130226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  XP_022749302.1 106 GEKDCAHYMLTRTCKFGDSCKFDHP 130
                     7889********************8 PP

2zf-CCCH34.53.5e-11159183327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C+ff++t  Ck+G++CkF+H++
  XP_022749302.1 159 EPDCPFFLKTQRCKFGSKCKFNHPK 183
                     589********************96 PP

3zf-CCCH38.91.4e-12206230327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G++CkF+H++
  XP_022749302.1 206 EPPCAFYMKTGKCKFGATCKFHHPK 230
                     79*********************96 PP

4zf-CCCH38.32.2e-12277300326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG CkyG++C+++H+
  XP_022749302.1 277 EVDCPFYLKTGSCKYGSSCRYNHP 300
                     579********************9 PP

5zf-CCCH361.1e-11356374826
                     GGGGTS--TTTTT-SS-SS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                     ++++tG+Ck+GdrCkF+H+
  XP_022749302.1 356 YYMKTGECKFGDRCKFHHP 374
                     9*****************9 PP

6zf-CCCH39.68.9e-13406427627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++CkF H+p
  XP_022749302.1 406 CPYYMKTGTCKYGATCKFDHPP 427
                     ********************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MANQLYGYSS PSPSASLSLR YLDSDSTTHS HFLHHLQPWP PTVDVSSSAA AAPPIKRPSQ  60
VLYHQNVLDA HNTIGQIEAW YSTSSLVKRP RFESSSNLPI YPQRPGEKDC AHYMLTRTCK  120
FGDSCKFDHP IWVPEGGIPY WKEVPLLATG ESLPERAEEP DCPFFLKTQR CKFGSKCKFN  180
HPKDKLATSG DSENTQVSVL PDRPSEPPCA FYMKTGKCKF GATCKFHHPK DIQIPSFGQG  240
NTKCEQIEAV TKIGGATVDL KPAQFLNSKG LPIRLDEVDC PFYLKTGSCK YGSSCRYNHP  300
DRNAFNPPAA AIGHSLIASA NNLNIGVVTP ASSLYQTIDP RLSQTTLLAQ QTLPTYYMKT  360
GECKFGDRCK FHHPVDRLAS TTNETSQQAV KLTLAGFPRR EGSVHCPYYM KTGTCKYGAT  420
CKFDHPPPGE VMAMAAAQGT PTTIGQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-180C3H family protein