PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022749300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 465aa MW: 51164 Da PI: 8.2335 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.6 | 6.5e-11 | 106 | 130 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022749300.1 106 GEKDCAHYMLTRTCKFGDSCKFDHP 130 7889********************8 PP | |||||||
2 | zf-CCCH | 34.4 | 3.7e-11 | 159 | 183 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ff++t Ck+G++CkF+H++ XP_022749300.1 159 EPDCPFFLKTQRCKFGSKCKFNHPK 183 589********************96 PP | |||||||
3 | zf-CCCH | 38.8 | 1.5e-12 | 206 | 230 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_022749300.1 206 EPPCAFYMKTGKCKFGATCKFHHPK 230 79*********************96 PP | |||||||
4 | zf-CCCH | 38.3 | 2.3e-12 | 277 | 300 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_022749300.1 277 EVDCPFYLKTGSCKYGSSCRYNHP 300 579********************9 PP | |||||||
5 | zf-CCCH | 43.6 | 4.8e-14 | 368 | 392 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+GdrCkF+H+ XP_022749300.1 368 GQSECDYYMKTGECKFGDRCKFHHP 392 7899********************9 PP | |||||||
6 | zf-CCCH | 39.5 | 9.4e-13 | 424 | 445 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_022749300.1 424 CPYYMKTGTCKYGATCKFDHPP 445 ********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MANQLYGYSS PSPSASLSLR YLDSDSTTHS HFLHHLQPWP PTVDVSSSAA AAPPIKRPSQ 60 VLYHQNVLDA HNTIGQIEAW YSTSSLVKRP RFESSSNLPI YPQRPGEKDC AHYMLTRTCK 120 FGDSCKFDHP IWVPEGGIPY WKEVPLLATG ESLPERAEEP DCPFFLKTQR CKFGSKCKFN 180 HPKDKLATSG DSENTQVSVL PDRPSEPPCA FYMKTGKCKF GATCKFHHPK DIQIPSFGQG 240 NTKCEQIEAV TKIGGATVDL KPAQFLNSKG LPIRLDEVDC PFYLKTGSCK YGSSCRYNHP 300 DRNAFNPPAA AIGHSLIASA NNLNIGVVTP ASSLYQTIDP RLSQTTLLAQ QTLPTMGVAP 360 TVYPQRPGQS ECDYYMKTGE CKFGDRCKFH HPVDRLASTT NETSQQAVKL TLAGFPRREG 420 SVHCPYYMKT GTCKYGATCK FDHPPPGEVM AMAAAQGTPT TIGQD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |