PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022747616.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1216aa MW: 132534 Da PI: 8.0094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022747616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	1193	1216	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G Ck G++C + H+ XP_022747616.1 1193 GQRVCK-FHENGNCKKGASCDYLHP 1216 6789.9999***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1216 aa Download sequence
MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD DKCSWEYLFK 60 DYWIDLKRRL SITSDELAKA KNPWKGAAKL ESPNELHGFN DGGGTDSDSS SRNVELTVSK 120 RRKTRSQSKS RAREGVSAST ASGEGASTNE SAEWASKELL EVVMHMRNGG KSVLSRMELS 180 QLILDYIQKH KLRDRCSKSY VICDSRLKNL FGKPRVGHIE MLNLLDPHIF FTKEDSQTDD 240 LQGSVVDAEA NQLEADWNSD ALTRTGKDKK RKTRKKGDAR GLQSNLDDYA AIDMHNINLI 300 YLRRNLVEDL LEDTETFHDK VVGSFVRIRI SGAGQKQDLY RLVQVVGTSK VAEPYRVGKR 360 TTDSLLEILN LNKTEVISID IISNQEFTED ECKRLRQSIK FGLIKRLTVG DIQEKAMAIQ 420 AVRVKDWLES EIMRLSHLRD RASEKGRRKE LRECVEKLQI LKAPEERQRR LEEIPEIHVD 480 PKMDPSYESE EDEGEDDKKQ DNFMRPRGSF GRRGKEAISP RNGGLSSSDS WSGSRNYTSM 540 NRELSRNLSN KGFTSKGDDS IGTSEMGNGN LWNPGRERET QQQNSWDRPK TALSSEIGLR 600 KDHSAVIQEP PLKVGSEISP TPLPTGVTTV PINETEKIWH YKDPSRKVQG PFSMVQLRKW 660 SNTGYFPAEL KIWRTNEKQD DSILLTDALA GKFQKDPAVA DSFPKAQKAL YGNSLGATLN 720 QGIESQVGER LRFDQNHEAW SPQHTLGLSG QSAGESLKSQ NEVSSSTVRV APSSLEIPKY 780 SRDTWGSDTN LPSPTPNQNP TGGTKGQAFE SNWSPTPVQS TGSLSVANPF QGGTAGLQPP 840 VVSESGSPVA PLVHSHPMVS GESNRTQVNA QASINSGADL KNAGASLQNL VQSVSYHNPS 900 VETHGWGSGS VSRQEAVATS FMPATGTQAW GNASAQKLEP NPSPAMPAQP AAYGHWNCAS 960 QSGQISAPFG IGNPAGVFPT PGQPTMLASD SWMPTVPLQS KVQLPAPPNL PWGMSVAETQ 1020 CAGLRQAPAN QNTGWGPMPG NQNMGWGAPL PANTNVNWGA ASHGSASVNP NPGWATPSQG 1080 QVPGNANSGW TTPGNAMQGW APPVQGPTIF NANSGWVAPA QGAASGGANP GYVAPSGNSG 1140 MWGNESNYYG DKFSNQSDMG SQGGDSGFGG VKPWNRQSSF GSGGSSSRSP FKGQRVCKFH 1200 ENGNCKKGAS CDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1216 aa Download sequence

MCYTCTFSLC KGCIKDAVIL CVRGNKGLCE SCMNLVMLIE RNEQAQVDFD DKCSWEYLFK  60
DYWIDLKRRL SITSDELAKA KNPWKGAAKL ESPNELHGFN DGGGTDSDSS SRNVELTVSK  120
RRKTRSQSKS RAREGVSAST ASGEGASTNE SAEWASKELL EVVMHMRNGG KSVLSRMELS  180
QLILDYIQKH KLRDRCSKSY VICDSRLKNL FGKPRVGHIE MLNLLDPHIF FTKEDSQTDD  240
LQGSVVDAEA NQLEADWNSD ALTRTGKDKK RKTRKKGDAR GLQSNLDDYA AIDMHNINLI  300
YLRRNLVEDL LEDTETFHDK VVGSFVRIRI SGAGQKQDLY RLVQVVGTSK VAEPYRVGKR  360
TTDSLLEILN LNKTEVISID IISNQEFTED ECKRLRQSIK FGLIKRLTVG DIQEKAMAIQ  420
AVRVKDWLES EIMRLSHLRD RASEKGRRKE LRECVEKLQI LKAPEERQRR LEEIPEIHVD  480
PKMDPSYESE EDEGEDDKKQ DNFMRPRGSF GRRGKEAISP RNGGLSSSDS WSGSRNYTSM  540
NRELSRNLSN KGFTSKGDDS IGTSEMGNGN LWNPGRERET QQQNSWDRPK TALSSEIGLR  600
KDHSAVIQEP PLKVGSEISP TPLPTGVTTV PINETEKIWH YKDPSRKVQG PFSMVQLRKW  660
SNTGYFPAEL KIWRTNEKQD DSILLTDALA GKFQKDPAVA DSFPKAQKAL YGNSLGATLN  720
QGIESQVGER LRFDQNHEAW SPQHTLGLSG QSAGESLKSQ NEVSSSTVRV APSSLEIPKY  780
SRDTWGSDTN LPSPTPNQNP TGGTKGQAFE SNWSPTPVQS TGSLSVANPF QGGTAGLQPP  840
VVSESGSPVA PLVHSHPMVS GESNRTQVNA QASINSGADL KNAGASLQNL VQSVSYHNPS  900
VETHGWGSGS VSRQEAVATS FMPATGTQAW GNASAQKLEP NPSPAMPAQP AAYGHWNCAS  960
QSGQISAPFG IGNPAGVFPT PGQPTMLASD SWMPTVPLQS KVQLPAPPNL PWGMSVAETQ  1020
CAGLRQAPAN QNTGWGPMPG NQNMGWGAPL PANTNVNWGA ASHGSASVNP NPGWATPSQG  1080
QVPGNANSGW TTPGNAMQGW APPVQGPTIF NANSGWVAPA QGAASGGANP GYVAPSGNSG  1140
MWGNESNYYG DKFSNQSDMG SQGGDSGFGG VKPWNRQSSF GSGGSSSRSP FKGQRVCKFH  1200
ENGNCKKGAS CDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein