PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022747385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23565.9 Da PI: 7.2165 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.3 | 4.6e-42 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+lapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l+a+la XP_022747385.1 64 PCAACKILRRRCVEKCILAPYFPPSEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVSDLQAQLA 158 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_022747385.1 159 KAQAE 163 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MENNVKAVIS PISVSTPFSY SPSSSSSSGF PSPNSQSSPN NSHQLPPPPP PPTASSPPLV 60 VVSPCAACKI LRRRCVEKCI LAPYFPPSEP YKFTIAHRVF GASNIIKSLQ ELPESQRADA 120 VSSMVYEASA RIRDPVYGCA GAICQLQKQV SDLQAQLAKA QAEIVTMQCQ QANLLALICM 180 EMKQSKEPMS QQQLHSIDTS CFLDDSNLAQ AWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-72 | LBD family protein |