PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022747367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24857.1 Da PI: 6.5692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.1 | 3.3e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ap+f+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP++G+v++i++lqqq+++l++e+ XP_022747367.1 7 SCGACKFLRRKCTTECVFAPHFCYDEaANHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARLRDPIHGCVAHIFALQQQVANLQEEI 101 6***********************9878******************************************************************* PP DUF260 95 allkee 100 + l+++ XP_022747367.1 102 EILNNQ 107 *99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MSGLGSSCGA CKFLRRKCTT ECVFAPHFCY DEAANHFAAV HKVFGASNVS KLLLHLPMHN 60 RSDAAVTISY EALARLRDPI HGCVAHIFAL QQQVANLQEE IEILNNQMAN HAVEFPGCGN 120 HQAAVNSDGK KQSTSLHETM NTLYYQDEQA TLPNHPGFMT GNQILDSQLC ESFPGSYKRE 180 DQNILCTLYQ NPPEIKLEGV ESGILIDYPC MGNSGATANR KGPSWK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-57 | LBD family protein |