PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745900.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 687aa MW: 74641.6 Da PI: 6.4321

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745900.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.9e-08	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_022745900.1 274 PCPEFRK-GACPKGDACEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MCSGSKSELV PSSFIMEGEI QEREAVALCK CSILLELAAS DDLVAFKSEV EEKGLDLGES 60 SFWYGRRIGS RKMGFEERTP LLIASMFGSV DVLKYIIGSG KIDVNRACGS DGVTALHCAV 120 AGGSNSSVEV VKLLLHASAD ANCVDANGNK PIDLIVPALK SLSNSRRKVI ELLLKGDDVV 180 GVSDNILNQE EESERAALPQ LLKEGTEKKE YPIDVTLPDI NNGIYGTDDF RMYTFKVKPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKFPY SCVPCPEFRK GACPKGDACE YAHGVFESWL 300 HPAQYRTRLC KDEISCTRKV CFFAHKPDEL RPVYASTGSA MPSPRSAAVN AVDMATLSPL 360 ALSSSSLPLP TASTPPMSPL AASSSPNTGS LWQNKINLTP PALQLSGSRL KTAFSARDFE 420 LEMELLGLQN HASQLQQQQL MDEISSLSSP SCWSKEYSRL GDLKPANLDD VFGSLDPSLL 480 SPLKGLSAKS ATPTQLQSPT GRQIRQNLNQ LRASYPTSIS SSAVRKPLAF GFDSSAAVAA 540 AVMNSRSSPF AKRSQSFIDR GTMTSRAGLT APANSATMMS SNISDWGSPD GKLDWGIQGD 600 ELNKLRKSVS FGFRNNNPAA TAAKDMMPSD VDEPDVSWVH SLVKDVTPLG GGLQRQQQQQ 660 YSIGKGVRET LPPWVEQMYI EQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MCSGSKSELV PSSFIMEGEI QEREAVALCK CSILLELAAS DDLVAFKSEV EEKGLDLGES  60
SFWYGRRIGS RKMGFEERTP LLIASMFGSV DVLKYIIGSG KIDVNRACGS DGVTALHCAV  120
AGGSNSSVEV VKLLLHASAD ANCVDANGNK PIDLIVPALK SLSNSRRKVI ELLLKGDDVV  180
GVSDNILNQE EESERAALPQ LLKEGTEKKE YPIDVTLPDI NNGIYGTDDF RMYTFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKFPY SCVPCPEFRK GACPKGDACE YAHGVFESWL  300
HPAQYRTRLC KDEISCTRKV CFFAHKPDEL RPVYASTGSA MPSPRSAAVN AVDMATLSPL  360
ALSSSSLPLP TASTPPMSPL AASSSPNTGS LWQNKINLTP PALQLSGSRL KTAFSARDFE  420
LEMELLGLQN HASQLQQQQL MDEISSLSSP SCWSKEYSRL GDLKPANLDD VFGSLDPSLL  480
SPLKGLSAKS ATPTQLQSPT GRQIRQNLNQ LRASYPTSIS SSAVRKPLAF GFDSSAAVAA  540
AVMNSRSSPF AKRSQSFIDR GTMTSRAGLT APANSATMMS SNISDWGSPD GKLDWGIQGD  600
ELNKLRKSVS FGFRNNNPAA TAAKDMMPSD VDEPDVSWVH SLVKDVTPLG GGLQRQQQQQ  660
YSIGKGVRET LPPWVEQMYI EQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein