PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745531.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HB-PHD

Protein Properties

Length: 940aa MW: 104200 Da PI: 5.2778

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.3	4.6e-12	857	898	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++L + F++n+yp+++++e LAk+l++t +qV+ WF N R XP_022745531.1 857 VKQRLHSSFKENQYPDRATKESLAKELEMTFQQVSKWFENAR 898 6789************************************99 PP
2	PHD	34.5	4.5e-12	486	541	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C+ fH++Cl+++l +e++p + wlC++C++k XP_022745531.1 486 FCAKCGSkdLSSNNDIILCDGaCDCGFHQYCLQPPLLKEDIPPDheGWLCPRCDCK 541 699*977667****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence
MGVSPSRAKS KKENHCCPEE STSQQAHEFG SEYLHSELSE NKHRCGCAVT QNESAEIATC 60 VSSSAIHEPS SEYVAKNSSP EHLGLLPKGA SGHDHTDKSF YPQETVSGKT HKYCSQYVNK 120 ETSENKNQPS SEIVQNELEE ACTFVCGLPA KHLQPFSEDL SKNAITEGLG LPPDDSSKCN 180 QTDKLSCPQL DSSEPTVDFG SGNMRKKLCE PLEQRQELDS KGLPNGIEKS TTAVSSNVFN 240 QILQLNPEDM NKSHCSRHLQ SPPEGASSVI QTSKSSPVEP LRLLQEFAAG NPSIQQPSFH 300 IEDMAKNSGA EQHEIMPKNL LKNSGRCRDG KTSKRMKKKY MLRSLTSSDR ILRSKSQDKP 360 KATESSNILA DVGSSEQQKR RKRKKRKAKR EVADEYSRIR AHLRYLLNRM NYEQSLIAVY 420 SAEGWKGLSL EKLKPEKELQ RATSEILRLK LKIRDLFQRI DSLCAEGRLP ESLFDSEGQI 480 DSEDIFCAKC GSKDLSSNND IILCDGACDC GFHQYCLQPP LLKEDIPPDH EGWLCPRCDC 540 KVDCIELVNE SQGTSFSLTD SWEKVFPEAA VAAGGQNQDP NFGLPSDDSD DNDYNPDSSE 600 TDEKDWGDES SSDESDFTST SEELEAPAKV NPYLELRSDD SEDDDYDPNG PDHDNAVKPE 660 SSSSDFTSDS EDLGAMLEDN ISSQKEEGAV FINASRDSKR QKPKLGGRES LNDELLSVME 720 SASEQDGAAA SKKRSIERLD YKRLYDETYG SVSSSSSDDD YWNDATALRK RKKCAAEAAS 780 AAAANGNVSV SRSVSVSDGL KLYPEGTEHK PRRKTRQKSN LKDTDLSPAE LQVGTSVSGS 840 SGKKVGSSTY RRLGEAVKQR LHSSFKENQY PDRATKESLA KELEMTFQQV SKWFENARWS 900 FNNSPSINET TAKKVSENDI TSARPKKNCK MVTEKDKSKC

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence

MGVSPSRAKS KKENHCCPEE STSQQAHEFG SEYLHSELSE NKHRCGCAVT QNESAEIATC  60
VSSSAIHEPS SEYVAKNSSP EHLGLLPKGA SGHDHTDKSF YPQETVSGKT HKYCSQYVNK  120
ETSENKNQPS SEIVQNELEE ACTFVCGLPA KHLQPFSEDL SKNAITEGLG LPPDDSSKCN  180
QTDKLSCPQL DSSEPTVDFG SGNMRKKLCE PLEQRQELDS KGLPNGIEKS TTAVSSNVFN  240
QILQLNPEDM NKSHCSRHLQ SPPEGASSVI QTSKSSPVEP LRLLQEFAAG NPSIQQPSFH  300
IEDMAKNSGA EQHEIMPKNL LKNSGRCRDG KTSKRMKKKY MLRSLTSSDR ILRSKSQDKP  360
KATESSNILA DVGSSEQQKR RKRKKRKAKR EVADEYSRIR AHLRYLLNRM NYEQSLIAVY  420
SAEGWKGLSL EKLKPEKELQ RATSEILRLK LKIRDLFQRI DSLCAEGRLP ESLFDSEGQI  480
DSEDIFCAKC GSKDLSSNND IILCDGACDC GFHQYCLQPP LLKEDIPPDH EGWLCPRCDC  540
KVDCIELVNE SQGTSFSLTD SWEKVFPEAA VAAGGQNQDP NFGLPSDDSD DNDYNPDSSE  600
TDEKDWGDES SSDESDFTST SEELEAPAKV NPYLELRSDD SEDDDYDPNG PDHDNAVKPE  660
SSSSDFTSDS EDLGAMLEDN ISSQKEEGAV FINASRDSKR QKPKLGGRES LNDELLSVME  720
SASEQDGAAA SKKRSIERLD YKRLYDETYG SVSSSSSDDD YWNDATALRK RKKCAAEAAS  780
AAAANGNVSV SRSVSVSDGL KLYPEGTEHK PRRKTRQKSN LKDTDLSPAE LQVGTSVSGS  840
SGKKVGSSTY RRLGEAVKQR LHSSFKENQY PDRATKESLA KELEMTFQQV SKWFENARWS  900
FNNSPSINET TAKKVSENDI TSARPKKNCK MVTEKDKSKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	385	QQKRRKRKK
2	378	387	QKRRKRKKRK
3	379	385	KRRKRKK
4	379	387	KRRKRKKRK
5	379	390	KRRKRKKRKAKR
6	380	386	KRRKRKK
7	381	387	KRRKRKK
8	381	385	RKRKK
9	382	390	KRRKRKKRK
10	769	773	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-88	HB-PHD family protein