PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022745514.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HB-PHD

Protein Properties

Length: 946aa MW: 104938 Da PI: 5.3288

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022745514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.3	4.7e-12	863	904	11	52
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++L + F++n+yp+++++e LAk+l++t +qV+ WF N R XP_022745514.1 863 VKQRLHSSFKENQYPDRATKESLAKELEMTFQQVSKWFENAR 904 6789************************************99 PP
2	PHD	34.5	4.6e-12	492	547	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C+ fH++Cl+++l +e++p + wlC++C++k XP_022745514.1 492 FCAKCGSkdLSSNNDIILCDGaCDCGFHQYCLQPPLLKEDIPPDheGWLCPRCDCK 547 699*977667****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MIKVEHMGVS PSRAKSKKEN HCCPEESTSQ QAHEFGSEYL HSELSENKHR CGCAVTQNES 60 AEIATCVSSS AIHEPSSEYV AKNSSPEHLG LLPKGASGHD HTDKSFYPQE TVSGKTHKYC 120 SQYVNKETSE NKNQPSSEIV QNELEEACTF VCGLPAKHLQ PFSEDLSKNA ITEGLGLPPD 180 DSSKCNQTDK LSCPQLDSSE PTVDFGSGNM RKKLCEPLEQ RQELDSKGLP NGIEKSTTAV 240 SSNVFNQILQ LNPEDMNKSH CSRHLQSPPE GASSVIQTSK SSPVEPLRLL QEFAAGNPSI 300 QQPSFHIEDM AKNSGAEQHE IMPKNLLKNS GRCRDGKTSK RMKKKYMLRS LTSSDRILRS 360 KSQDKPKATE SSNILADVGS SEQQKRRKRK KRKAKREVAD EYSRIRAHLR YLLNRMNYEQ 420 SLIAVYSAEG WKGLSLEKLK PEKELQRATS EILRLKLKIR DLFQRIDSLC AEGRLPESLF 480 DSEGQIDSED IFCAKCGSKD LSSNNDIILC DGACDCGFHQ YCLQPPLLKE DIPPDHEGWL 540 CPRCDCKVDC IELVNESQGT SFSLTDSWEK VFPEAAVAAG GQNQDPNFGL PSDDSDDNDY 600 NPDSSETDEK DWGDESSSDE SDFTSTSEEL EAPAKVNPYL ELRSDDSEDD DYDPNGPDHD 660 NAVKPESSSS DFTSDSEDLG AMLEDNISSQ KEEGAVFINA SRDSKRQKPK LGGRESLNDE 720 LLSVMESASE QDGAAASKKR SIERLDYKRL YDETYGSVSS SSSDDDYWND ATALRKRKKC 780 AAEAASAAAA NGNVSVSRSV SVSDGLKLYP EGTEHKPRRK TRQKSNLKDT DLSPAELQVG 840 TSVSGSSGKK VGSSTYRRLG EAVKQRLHSS FKENQYPDRA TKESLAKELE MTFQQVSKWF 900 ENARWSFNNS PSINETTAKK VSENDITSAR PKKNCKMVTE KDKSKC

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MIKVEHMGVS PSRAKSKKEN HCCPEESTSQ QAHEFGSEYL HSELSENKHR CGCAVTQNES  60
AEIATCVSSS AIHEPSSEYV AKNSSPEHLG LLPKGASGHD HTDKSFYPQE TVSGKTHKYC  120
SQYVNKETSE NKNQPSSEIV QNELEEACTF VCGLPAKHLQ PFSEDLSKNA ITEGLGLPPD  180
DSSKCNQTDK LSCPQLDSSE PTVDFGSGNM RKKLCEPLEQ RQELDSKGLP NGIEKSTTAV  240
SSNVFNQILQ LNPEDMNKSH CSRHLQSPPE GASSVIQTSK SSPVEPLRLL QEFAAGNPSI  300
QQPSFHIEDM AKNSGAEQHE IMPKNLLKNS GRCRDGKTSK RMKKKYMLRS LTSSDRILRS  360
KSQDKPKATE SSNILADVGS SEQQKRRKRK KRKAKREVAD EYSRIRAHLR YLLNRMNYEQ  420
SLIAVYSAEG WKGLSLEKLK PEKELQRATS EILRLKLKIR DLFQRIDSLC AEGRLPESLF  480
DSEGQIDSED IFCAKCGSKD LSSNNDIILC DGACDCGFHQ YCLQPPLLKE DIPPDHEGWL  540
CPRCDCKVDC IELVNESQGT SFSLTDSWEK VFPEAAVAAG GQNQDPNFGL PSDDSDDNDY  600
NPDSSETDEK DWGDESSSDE SDFTSTSEEL EAPAKVNPYL ELRSDDSEDD DYDPNGPDHD  660
NAVKPESSSS DFTSDSEDLG AMLEDNISSQ KEEGAVFINA SRDSKRQKPK LGGRESLNDE  720
LLSVMESASE QDGAAASKKR SIERLDYKRL YDETYGSVSS SSSDDDYWND ATALRKRKKC  780
AAEAASAAAA NGNVSVSRSV SVSDGLKLYP EGTEHKPRRK TRQKSNLKDT DLSPAELQVG  840
TSVSGSSGKK VGSSTYRRLG EAVKQRLHSS FKENQYPDRA TKESLAKELE MTFQQVSKWF  900
ENARWSFNNS PSINETTAKK VSENDITSAR PKKNCKMVTE KDKSKC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	391	QQKRRKRKK
2	384	393	QKRRKRKKRK
3	385	391	KRRKRKK
4	385	393	KRRKRKKRK
5	385	396	KRRKRKKRKAKR
6	386	392	KRRKRKK
7	387	393	KRRKRKK
8	387	391	RKRKK
9	388	396	KRRKRKKRK
10	775	779	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-88	HB-PHD family protein