PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022745476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 449aa MW: 49047.3 Da PI: 8.3282 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.6 | 1.6e-11 | 58 | 84 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022745476.1 58 PGEPDCSYYIRTGLCRFGATCRFNHPP 84 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022745476.1 105 QPECQYYLKTGTCKFGATCKFHHPR 129 799********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8e-12 | 151 | 175 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_022745476.1 151 ETECAYYLRTGQCKFGSTCKFHHPQ 175 578********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022745476.1 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 3.9e-13 | 356 | 382 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ XP_022745476.1 356 PGEPLCIFYSRYGICKFGPSCKFNHPM 382 589**********************95 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 449 aa Download sequence |
MEFSFDAGIP MSRTAAAAAA AAVTEGTSLS PSLNQDAMWQ MNLRSGEIME SGPYPEHPGE 60 PDCSYYIRTG LCRFGATCRF NHPPNRKLAI AAARMKGDFP ERVGQPECQY YLKTGTCKFG 120 ATCKFHHPRD KAGIAGRVSL NILGYPLRPN ETECAYYLRT GQCKFGSTCK FHHPQPTNMM 180 VSLRGSPIYP TIPSPTTPGQ QSYPGDITNW SRASFIPNPR WQGPSSYAPL ILPQGMVSVP 240 GWNAYSGQLA SVSSSENLQL ANGNNQIYGT SRQNESVAAE SQASFSQFRS GSVPVGFYAL 300 QRENVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERVL PAPDCMLSPL GLPLRPGEPL 360 CIFYSRYGIC KFGPSCKFNH PMGIFTYNYS ASSPSDAPVH RFLGSSSGTT GLILSSEGLV 420 EAGSTNPRRL SLSENRKLSS SDDNIDTEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-179 | C3H family protein |