PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022743659.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 295aa    MW: 30821 Da    PI: 9.6844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022743659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  f+ t  C++G++C+F H
  XP_022743659.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                    7789******************** PP

2zf-CCCH28.42.7e-09100124226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC+ f+    CkyGd+C+FaHg
  XP_022743659.1 100 KTRLCNKFSSAEGCKYGDKCHFAHG 124
                     8***********************9 PP

3zf-CCCH38.22.4e-12262286126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+lC++fa+ G C +G+rC+FaHg
  XP_022743659.1 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286
                     9**********.*************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MDTRKRGRNE AGFNFNGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ IMNLAPAVPA ASRSMAASAA IPNGSAPAVK TRLCNKFSSA EGCKYGDKCH  120
FAHGDWELGK PIAQSHDDPR TMAPIPGHMG SRMEPPPPSG PAASFGASAT AKISVDASLA  180
GAIIGKGGVH SKQICRRTGA KLSIREHESD PTLRNIELEG SFEQIKQASA MVRELISSLG  240
PVPGPAKPPG VTGGQGHSGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-56C3H family protein