PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022743659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 30821 Da PI: 9.6844 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_022743659.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 28.4 | 2.7e-09 | 100 | 124 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC+ f+ CkyGd+C+FaHg XP_022743659.1 100 KTRLCNKFSSAEGCKYGDKCHFAHG 124 8***********************9 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +G+rC+FaHg XP_022743659.1 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MDTRKRGRNE AGFNFNGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAQ IMNLAPAVPA ASRSMAASAA IPNGSAPAVK TRLCNKFSSA EGCKYGDKCH 120 FAHGDWELGK PIAQSHDDPR TMAPIPGHMG SRMEPPPPSG PAASFGASAT AKISVDASLA 180 GAIIGKGGVH SKQICRRTGA KLSIREHESD PTLRNIELEG SFEQIKQASA MVRELISSLG 240 PVPGPAKPPG VTGGQGHSGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKTVV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-56 | C3H family protein |