PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022743509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23869.2 Da PI: 8.9447 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.5 | 1.7e-41 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r d+++slvyeA++r+ dPvyG++g i++lqqq+++l+ael+ XP_022743509.1 44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLGDPVYGCMGAISALQQQVQSLQAELN 138 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_022743509.1 139 AVRAE 143 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MSRERERVDE IGKKIKREAD VSSNHQMGRR HMLGPPGTLN TITPCAACKL LRRRCAQECP 60 FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADT ANSLVYEANV RLGDPVYGCM 120 GAISALQQQV QSLQAELNAV RAEIIKYKYR EANLLSSSHV ALLSPGVVSI AAPPQPAPIQ 180 PPTPPPALPP TPTSSMYTQR TTTADYSTIS NENVSYFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-86 | LBD family protein |