PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022743269.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 23949.4 Da PI: 5.2171 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.9 | 2.9e-42 | 67 | 166 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rdPvyG++g+i +lq+q++ l+a+la XP_022743269.1 67 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRDPVYGCAGTICQLQKQVSDLQAQLA 161 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_022743269.1 162 KTQAE 166 *9987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence |
MENNDKTPIS PISVSIPFSY SPSSSSPLPS QYSPGFPSPN SQSSPNNSLQ LPAPPPASPP 60 PPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPYKFTIAH RVFGASNIIK SLQELPESQR 120 ADAVSSMVYE ASARIRDPVY GCAGTICQLQ KQVSDLQAQL AKTQAEIVTM QCQQANLLAL 180 ICMEMTQSKE PISQLQPYSI DTSCFLDDSN LASAWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-70 | LBD family protein |