PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022742461.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 673aa MW: 72861.7 Da PI: 6.0108

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022742461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.8e-08	274	294	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_022742461.1 274 PCPEFRK-GACPKGDACEYAHG 294 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MCSGSKSELV PSTFIMEGEL QELKAGDLCK CSVLLELAAS DDLVAFKTEV EAKGLDLNEA 60 SFWYGRRVGS RKMGFEERTP LIIAAMFGSV DVLKYIIGSG KIDVNRASAT DGVTALHCAV 120 AGGSNSSVEI VKLLLDGSAD ANCVDANGNK PIDLIVPVLK SLSNTRRKVI DLLLNGDDIV 180 GVSDHVLNQE EESEKTALPQ LLKEGSEKKE YPIDVSLPDI NNGIYGTDDF RMFTFKVKPC 240 SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GACPKGDACE YAHGVFESWL 300 HPAQYRTRLC KDEIGCTRKV CFFAHKPEEL RTVYASTGSA MPSPSRSAAV NAVDMATLSP 360 LAFGSPSLPL PTASTPPMSP LAASSSPKIG GLWQNKINLT PPALQLPGSR LKTAFSARDF 420 DTEMELLGLM DEISNLSSPS CWSKEYSRLG DLKPTNLDDA FGSLDPSLLS PLKGLSVKSA 480 IPTQFQSPTG LQIHQNLNQL CAGYPTNLSS SPVRKPSAFG FDSSAAVPAV MNCRSSAFAK 540 RSQSFIDRGA MISHAGLTAP ANSATMMSSN ISDWSSPDGK LDWGIQGDEL NKLRKSASFG 600 FRNNNPAATA TTNMMPSDVD EPDVSWVHSL VKDVTPLGGG LQQQQQHRLG RGVRETLPAW 660 MEQMCIEQEQ MVA

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MCSGSKSELV PSTFIMEGEL QELKAGDLCK CSVLLELAAS DDLVAFKTEV EAKGLDLNEA  60
SFWYGRRVGS RKMGFEERTP LIIAAMFGSV DVLKYIIGSG KIDVNRASAT DGVTALHCAV  120
AGGSNSSVEI VKLLLDGSAD ANCVDANGNK PIDLIVPVLK SLSNTRRKVI DLLLNGDDIV  180
GVSDHVLNQE EESEKTALPQ LLKEGSEKKE YPIDVSLPDI NNGIYGTDDF RMFTFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKYPY SCVPCPEFRK GACPKGDACE YAHGVFESWL  300
HPAQYRTRLC KDEIGCTRKV CFFAHKPEEL RTVYASTGSA MPSPSRSAAV NAVDMATLSP  360
LAFGSPSLPL PTASTPPMSP LAASSSPKIG GLWQNKINLT PPALQLPGSR LKTAFSARDF  420
DTEMELLGLM DEISNLSSPS CWSKEYSRLG DLKPTNLDDA FGSLDPSLLS PLKGLSVKSA  480
IPTQFQSPTG LQIHQNLNQL CAGYPTNLSS SPVRKPSAFG FDSSAAVPAV MNCRSSAFAK  540
RSQSFIDRGA MISHAGLTAP ANSATMMSSN ISDWSSPDGK LDWGIQGDEL NKLRKSASFG  600
FRNNNPAATA TTNMMPSDVD EPDVSWVHSL VKDVTPLGGG LQQQQQHRLG RGVRETLPAW  660
MEQMCIEQEQ MVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein