PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022742417.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 697aa MW: 75732.8 Da PI: 6.2729

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022742417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022742417.1 276 PCPDFRK-GACRRGDMCEYAHG 296 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MNHLTVETED TFASLLELAA NNDVEGFKRS IERDPSGVDE VGLWYGRQKG SKQMVNEERT 60 PLMVAATYGS IDVIKLILSS SDADVNRVCG HDKSTALHCA ASGGAVNVID VVKLLLAAGA 120 DVNVVDANGH LPADVIVVPP KLQAVKLALE ELLATESSVL ERNLRVSTAI LNFNSPPLSP 180 SQENGSLSSG SDSPIKSKST DVPISSTSEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC 300 WLHPAQYRTR LCKDGTSCAR RVCFFAHTPE ELRPLFVSTG SAVPSPRSST SGAAAIDFAT 360 ALSLLPGSPS SVSVMSPSPF TPPMSPSANG MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS 420 SLNARDIPAE DFNLLPDFDM QQHQLINELS SFTQPSMSSS SLNRSGRLKT LTPSNLDDLF 480 SAENSSPRYS DQALAAAVFS PTHKSAVLNQ YQQQQSMLSP INTNFSPKNI EHPLLQASLS 540 GRMSPRNVEP ISPMSSRVSM LAQREKQQQF RSLSSRELGS GSAAFVGSPV NSWSKWGSSN 600 GNPDWAVNAD ELGKHRRSSS FELGNGDEPD LSWVQSLVKE SPTEIKEKMA APVSGIAPNA 660 SSSEGSNMNS QIDPVDHAVL GAWFEQMQLD QLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MNHLTVETED TFASLLELAA NNDVEGFKRS IERDPSGVDE VGLWYGRQKG SKQMVNEERT  60
PLMVAATYGS IDVIKLILSS SDADVNRVCG HDKSTALHCA ASGGAVNVID VVKLLLAAGA  120
DVNVVDANGH LPADVIVVPP KLQAVKLALE ELLATESSVL ERNLRVSTAI LNFNSPPLSP  180
SQENGSLSSG SDSPIKSKST DVPISSTSEK KEYPIDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCAR RVCFFAHTPE ELRPLFVSTG SAVPSPRSST SGAAAIDFAT  360
ALSLLPGSPS SVSVMSPSPF TPPMSPSANG MSHSNVAWPQ PNVPALHLPG SNLQSSRLRS  420
SLNARDIPAE DFNLLPDFDM QQHQLINELS SFTQPSMSSS SLNRSGRLKT LTPSNLDDLF  480
SAENSSPRYS DQALAAAVFS PTHKSAVLNQ YQQQQSMLSP INTNFSPKNI EHPLLQASLS  540
GRMSPRNVEP ISPMSSRVSM LAQREKQQQF RSLSSRELGS GSAAFVGSPV NSWSKWGSSN  600
GNPDWAVNAD ELGKHRRSSS FELGNGDEPD LSWVQSLVKE SPTEIKEKMA APVSGIAPNA  660
SSSEGSNMNS QIDPVDHAVL GAWFEQMQLD QLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein