PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022742016.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 400aa MW: 44198.6 Da PI: 8.6026

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022742016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.7	3.5e-12	11	35	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022742016.1 11 QPECQHYLKTGTCKFGATCKFHHPR 35 799********************96 PP
2	zf-CCCH	38.7	1.6e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G++CkF+H++ XP_022742016.1 57 ETECDYYLKTGQCKFGSTCKFHHPQ 81 579********************97 PP
3	zf-CCCH	38	2.7e-12	216	242	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022742016.1 216 PGQPECQFYMKTGDCKFGAVCRFHHPR 242 5789*********************96 PP
4	zf-CCCH	39.5	9.2e-13	300	325	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF+H++ XP_022742016.1 300 GEPLCIFYSRYGICKFGPSCKFNHPM 325 689*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MKGEFPERVG QPECQHYLKT GTCKFGATCK FHHPRDKAGI AGSVSLNILG YPLRPNETEC 60 DYYLKTGQCK FGSTCKFHHP QPTNMMVSLR SSPIYPTVPS PTTPGQQSYP GGITNWSRAS 120 FIPSPRWQGP SSYAPFILPQ GMVSVPGWNT YSGQLASVSS SENLQQTNAN NQIYGTSRQN 180 ELATAGSQAS FSQFRSGSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCRFHH 240 PRERVLPAPD CLLSPIGLPL RPFSGSSAYH YTKSYSCITK LCFHPCNGNH NFTQFSLRRG 300 EPLCIFYSRY GICKFGPSCK FNHPMRIFTY NYSSSSPSDA PVHRFLGSSS GTAGLNLSSE 360 DLVEAGSTKP RRVSLSENRL LSSSDDNIDT EGQTLQQDTD

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MKGEFPERVG QPECQHYLKT GTCKFGATCK FHHPRDKAGI AGSVSLNILG YPLRPNETEC  60
DYYLKTGQCK FGSTCKFHHP QPTNMMVSLR SSPIYPTVPS PTTPGQQSYP GGITNWSRAS  120
FIPSPRWQGP SSYAPFILPQ GMVSVPGWNT YSGQLASVSS SENLQQTNAN NQIYGTSRQN  180
ELATAGSQAS FSQFRSGSVP VGFYALQREN VFPERPGQPE CQFYMKTGDC KFGAVCRFHH  240
PRERVLPAPD CLLSPIGLPL RPFSGSSAYH YTKSYSCITK LCFHPCNGNH NFTQFSLRRG  300
EPLCIFYSRY GICKFGPSCK FNHPMRIFTY NYSSSSPSDA PVHRFLGSSS GTAGLNLSSE  360
DLVEAGSTKP RRVSLSENRL LSSSDDNIDT EGQTLQQDTD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-137	C3H family protein