PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022742014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 491aa MW: 54248.9 Da PI: 8.4686 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022742014.1 55 PGEPDCSYYIRTGLCRFGATCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 37.3 | 4.5e-12 | 102 | 126 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022742014.1 102 QPECQHYLKTGTCKFGATCKFHHPR 126 799********************96 PP | |||||||
3 | zf-CCCH | 38.4 | 2.1e-12 | 148 | 172 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++tG+Ck+G++CkF+H++ XP_022742014.1 148 ETECDYYLKTGQCKFGSTCKFHHPQ 172 579********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.4e-12 | 307 | 333 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022742014.1 307 PGQPECQFYMKTGDCKFGAVCRFHHPR 333 5789*********************96 PP | |||||||
5 | zf-CCCH | 39.2 | 1.2e-12 | 391 | 416 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++lC f++r+G+Ck+G++CkF+H++ XP_022742014.1 391 GEPLCIFYSRYGICKFGPSCKFNHPM 416 689*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence |
MEFTFDAGLP MSRTAAAATV TEGTSFSPSL NQDAMWQMNL RSSETMESGP YPERPGEPDC 60 SYYIRTGLCR FGATCRFNHP PNRKLVIAAA RMKGEFPERV GQPECQHYLK TGTCKFGATC 120 KFHHPRDKAG IAGSVSLNIL GYPLRPNETE CDYYLKTGQC KFGSTCKFHH PQPTNMMVSL 180 RSSPIYPTVP SPTTPGQQSY PGGITNWSRA SFIPSPRWQG PSSYAPFILP QGMVSVPGWN 240 TYSGQLASVS SSENLQQTNA NNQIYGTSRQ NELATAGSQA SFSQFRSGSV PVGFYALQRE 300 NVFPERPGQP ECQFYMKTGD CKFGAVCRFH HPRERVLPAP DCLLSPIGLP LRPFSGSSAY 360 HYTKSYSCIT KLCFHPCNGN HNFTQFSLRR GEPLCIFYSR YGICKFGPSC KFNHPMRIFT 420 YNYSSSSPSD APVHRFLGSS SGTAGLNLSS EDLVEAGSTK PRRVSLSENR LLSSSDDNID 480 TEGQTLQQDT D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | C3H family protein |