PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_022741495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26535.3 Da PI: 9.9767 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.3 | 1.8e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+sk rng++KKA+EL vLCda+v++i+fsstgk++e++s XP_022741495.1 9 KRIENATNRQVTYSKTRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFIS 59 79***********************************************86 PP | |||||||
2 | K-box | 86.8 | 4.3e-29 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yqk++g++l+++++e++q+++++Lk+ +++L+re+ +++G +L++L++keLq Le ++++sl +R++K++++++q+ + +kk ++l+e+ +L XP_022741495.1 71 YQKTTGTDLWSSHYEKMQENYRRLKEINKKLRREIMQRMGGELDDLNIKELQALEAKMDSSLVFVRDRKYHVIKTQTYTHKKKVRNLEERRANLV 165 8999**************************************************************************************99996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MGRGKIEIKR IENATNRQVT YSKTRNGLFK KAQELTVLCD AKVSLIMFSS TGKFHEFISP 60 NISTKAFFDL YQKTTGTDLW SSHYEKMQEN YRRLKEINKK LRREIMQRMG GELDDLNIKE 120 LQALEAKMDS SLVFVRDRKY HVIKTQTYTH KKKVRNLEER RANLVFNLET KLDHQDGIVD 180 NEGYYEAAAL GLANGASNLY ALRLYQGYHP NLILHHGEKY GSNDLRHA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 9e-66 | MIKC_MADS family protein |