PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741081.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1157aa MW: 127513 Da PI: 5.41

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.1e-06	1134	1157	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C++ H+ XP_022741081.1 1134 GQRVCK-FYENGYCKKGASCRYWHP 1157 6799.6666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1157 aa Download sequence
MDPKGESSGE LNNISNARGA NMERSCEDLG ASYSKRRKGM KKEKFLNKVE SLEAEKPGVM 60 KGMLLPEGTN WATKELLEFV AHMKHGDLSV LSHFDVQALL LEYVKRSNLR DPRQKSYIVC 120 DSMLIKLFGK ARVAHFEMLK LLESHFLTQD HSRPINTIRA GGSEAVAQLA IDGSNDSHPL 180 IVNNKRRKTR KKVDEKGQKA NLDEFAAIDV HNMNLIYLKR NLMENLIDDT DKFNDKVVGS 240 FVRIKISGSD QKQDMYRLVQ VIGTSKVVEP YKIGERTTDI MLEILNLDKK EIVSIDGISN 300 QEFAEDECKR LRERIKCGLM KWFTVGEIQE KAVALQAVRV NDWLESEILR VKNLRDRASE 360 KGHMKEFREC IEKLQLLNSP DERQRRLHEI PDVHSDRNMN LYCKSEEVAG ELDEKKKDNH 420 MKSRNSGSGI KEKEPASPLK GGDILSDIGS RETSIPLHST GMELSVNNSE TDKIWHYQDP 480 LGKIQGPFSM ATLHRWSLSR HFPPDLRIWR VSEKQKDSIL LTDVLDGQYN QAQQLFHNSC 540 VRTEDMMIVS NDGCQNGDGD VRDSMDLNVT QMESKQVEGN TMQNDTNGHC YVNKEFVKSK 600 ELALQSSPST APVEIVSNAI QAGSPLPHWD SVNGENDFPC QPQVSSSLPL STLSGKPFET 660 QSHQFSKGHG AERWDCGLMN INENLNKTPE SQIIAGNVEH DDCEGRSGKS CGQSWRSTPL 720 NDASNGWDSN SGLISLARAL EASEHNQDID FPDIPTSTSK LNLEDSKSQA TENKQSLSSN 780 VPHQDSGPSW STASSLVGNG PQLPEIAGEW GGCSSTQVKP SAEEWDSNLV PESSLKPTVL 840 GSDHVATPTS GSGQLTHFSP TDPANNASGW DSIVPEPNDS SWGDESVSDL LAEVEAMESL 900 NGLSSPTSIL HSDGELAQGS DPDCFSPVGG LSPAPDPGKS DSLSSTNDLQ MPSESTVTNK 960 PFGVSQSQVL DAKKSSGGHS STSAEMDEDK RPSDVSVNQN EAGSDMQPPA STVTTWGMAT 1020 VDTAWRAGPE TTGTNWGTVQ GNANFNWGCL GQETTSVNWG TGQGTFQENG SINSGTSAAN 1080 PPYWGGQQRY AGQRERDFQG RDSSFVRGRS SVNRQSYSYG GPNRVGSFRP PLKGQRVCKF 1140 YENGYCKKGA SCRYWHP

Sequence ? help Back to Top

Protein Sequence Length: 1157 aa Download sequence

MDPKGESSGE LNNISNARGA NMERSCEDLG ASYSKRRKGM KKEKFLNKVE SLEAEKPGVM  60
KGMLLPEGTN WATKELLEFV AHMKHGDLSV LSHFDVQALL LEYVKRSNLR DPRQKSYIVC  120
DSMLIKLFGK ARVAHFEMLK LLESHFLTQD HSRPINTIRA GGSEAVAQLA IDGSNDSHPL  180
IVNNKRRKTR KKVDEKGQKA NLDEFAAIDV HNMNLIYLKR NLMENLIDDT DKFNDKVVGS  240
FVRIKISGSD QKQDMYRLVQ VIGTSKVVEP YKIGERTTDI MLEILNLDKK EIVSIDGISN  300
QEFAEDECKR LRERIKCGLM KWFTVGEIQE KAVALQAVRV NDWLESEILR VKNLRDRASE  360
KGHMKEFREC IEKLQLLNSP DERQRRLHEI PDVHSDRNMN LYCKSEEVAG ELDEKKKDNH  420
MKSRNSGSGI KEKEPASPLK GGDILSDIGS RETSIPLHST GMELSVNNSE TDKIWHYQDP  480
LGKIQGPFSM ATLHRWSLSR HFPPDLRIWR VSEKQKDSIL LTDVLDGQYN QAQQLFHNSC  540
VRTEDMMIVS NDGCQNGDGD VRDSMDLNVT QMESKQVEGN TMQNDTNGHC YVNKEFVKSK  600
ELALQSSPST APVEIVSNAI QAGSPLPHWD SVNGENDFPC QPQVSSSLPL STLSGKPFET  660
QSHQFSKGHG AERWDCGLMN INENLNKTPE SQIIAGNVEH DDCEGRSGKS CGQSWRSTPL  720
NDASNGWDSN SGLISLARAL EASEHNQDID FPDIPTSTSK LNLEDSKSQA TENKQSLSSN  780
VPHQDSGPSW STASSLVGNG PQLPEIAGEW GGCSSTQVKP SAEEWDSNLV PESSLKPTVL  840
GSDHVATPTS GSGQLTHFSP TDPANNASGW DSIVPEPNDS SWGDESVSDL LAEVEAMESL  900
NGLSSPTSIL HSDGELAQGS DPDCFSPVGG LSPAPDPGKS DSLSSTNDLQ MPSESTVTNK  960
PFGVSQSQVL DAKKSSGGHS STSAEMDEDK RPSDVSVNQN EAGSDMQPPA STVTTWGMAT  1020
VDTAWRAGPE TTGTNWGTVQ GNANFNWGCL GQETTSVNWG TGQGTFQENG SINSGTSAAN  1080
PPYWGGQQRY AGQRERDFQG RDSSFVRGRS SVNRQSYSYG GPNRVGSFRP PLKGQRVCKF  1140
YENGYCKKGA SCRYWHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	1e-175	C3H family protein