PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741080.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1285aa MW: 142337 Da PI: 5.6

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8e-06	1262	1285	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C++ H+ XP_022741080.1 1262 GQRVCK-FYENGYCKKGASCRYWHP 1285 6799.6666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1285 aa Download sequence
MKKMFALYAS MAGVSCFVIA GWHICSTCQK SSYYMCYTCT YSLCKNCTKD ADYLNVRGNK 60 GFCGMCMRTV VLIENSTLEN KEMVQVDFDD QTSWEYLFKV YWIFLKEKLS LSLDELTKAK 120 NPWKETAIMD PKGESSGELN NISNARGANM ERSCEDLGAS YSKRRKGMKK EKFLNKVESL 180 EAEKPGVMKG MLLPEGTNWA TKELLEFVAH MKHGDLSVLS HFDVQALLLE YVKRSNLRDP 240 RQKSYIVCDS MLIKLFGKAR VAHFEMLKLL ESHFLTQDHS RPINTIRAGG SEAVAQLAID 300 GSNDSHPLIV NNKRRKTRKK VDEKGQKANL DEFAAIDVHN MNLIYLKRNL MENLIDDTDK 360 FNDKVVGSFV RIKISGSDQK QDMYRLVQVI GTSKVVEPYK IGERTTDIML EILNLDKKEI 420 VSIDGISNQE FAEDECKRLR ERIKCGLMKW FTVGEIQEKA VALQAVRVND WLESEILRVK 480 NLRDRASEKG HMKEFRECIE KLQLLNSPDE RQRRLHEIPD VHSDRNMNLY CKSEEVAGEL 540 DEKKKDNHMK SRNSGSGIKE KEPASPLKGG DILSDIGSRE TSIPLHSTGM ELSVNNSETD 600 KIWHYQDPLG KIQGPFSMAT LHRWSLSRHF PPDLRIWRVS EKQKDSILLT DVLDGQYNQA 660 QQLFHNSCVR TEDMMIVSND GCQNGDGDVR DSMDLNVTQM ESKQVEGNTM QNDTNGHCYV 720 NKEFVKSKEL ALQSSPSTAP VEIVSNAIQA GSPLPHWDSV NGENDFPCQP QVSSSLPLST 780 LSGKPFETQS HQFSKGHGAE RWDCGLMNIN ENLNKTPESQ IIAGNVEHDD CEGRSGKSCG 840 QSWRSTPLND ASNGWDSNSG LISLARALEA SEHNQDIDFP DIPTSTSKLN LEDSKSQATE 900 NKQSLSSNVP HQDSGPSWST ASSLVGNGPQ LPEIAGEWGG CSSTQVKPSA EEWDSNLVPE 960 SSLKPTVLGS DHVATPTSGS GQLTHFSPTD PANNASGWDS IVPEPNDSSW GDESVSDLLA 1020 EVEAMESLNG LSSPTSILHS DGELAQGSDP DCFSPVGGLS PAPDPGKSDS LSSTNDLQMP 1080 SESTVTNKPF GVSQSQVLDA KKSSGGHSST SAEMDEDKRP SDVSVNQNEA GSDMQPPAST 1140 VTTWGMATVD TAWRAGPETT GTNWGTVQGN ANFNWGCLGQ ETTSVNWGTG QGTFQENGSI 1200 NSGTSAANPP YWGGQQRYAG QRERDFQGRD SSFVRGRSSV NRQSYSYGGP NRVGSFRPPL 1260 KGQRVCKFYE NGYCKKGASC RYWHP

Sequence ? help Back to Top

Protein Sequence Length: 1285 aa Download sequence

MKKMFALYAS MAGVSCFVIA GWHICSTCQK SSYYMCYTCT YSLCKNCTKD ADYLNVRGNK  60
GFCGMCMRTV VLIENSTLEN KEMVQVDFDD QTSWEYLFKV YWIFLKEKLS LSLDELTKAK  120
NPWKETAIMD PKGESSGELN NISNARGANM ERSCEDLGAS YSKRRKGMKK EKFLNKVESL  180
EAEKPGVMKG MLLPEGTNWA TKELLEFVAH MKHGDLSVLS HFDVQALLLE YVKRSNLRDP  240
RQKSYIVCDS MLIKLFGKAR VAHFEMLKLL ESHFLTQDHS RPINTIRAGG SEAVAQLAID  300
GSNDSHPLIV NNKRRKTRKK VDEKGQKANL DEFAAIDVHN MNLIYLKRNL MENLIDDTDK  360
FNDKVVGSFV RIKISGSDQK QDMYRLVQVI GTSKVVEPYK IGERTTDIML EILNLDKKEI  420
VSIDGISNQE FAEDECKRLR ERIKCGLMKW FTVGEIQEKA VALQAVRVND WLESEILRVK  480
NLRDRASEKG HMKEFRECIE KLQLLNSPDE RQRRLHEIPD VHSDRNMNLY CKSEEVAGEL  540
DEKKKDNHMK SRNSGSGIKE KEPASPLKGG DILSDIGSRE TSIPLHSTGM ELSVNNSETD  600
KIWHYQDPLG KIQGPFSMAT LHRWSLSRHF PPDLRIWRVS EKQKDSILLT DVLDGQYNQA  660
QQLFHNSCVR TEDMMIVSND GCQNGDGDVR DSMDLNVTQM ESKQVEGNTM QNDTNGHCYV  720
NKEFVKSKEL ALQSSPSTAP VEIVSNAIQA GSPLPHWDSV NGENDFPCQP QVSSSLPLST  780
LSGKPFETQS HQFSKGHGAE RWDCGLMNIN ENLNKTPESQ IIAGNVEHDD CEGRSGKSCG  840
QSWRSTPLND ASNGWDSNSG LISLARALEA SEHNQDIDFP DIPTSTSKLN LEDSKSQATE  900
NKQSLSSNVP HQDSGPSWST ASSLVGNGPQ LPEIAGEWGG CSSTQVKPSA EEWDSNLVPE  960
SSLKPTVLGS DHVATPTSGS GQLTHFSPTD PANNASGWDS IVPEPNDSSW GDESVSDLLA  1020
EVEAMESLNG LSSPTSILHS DGELAQGSDP DCFSPVGGLS PAPDPGKSDS LSSTNDLQMP  1080
SESTVTNKPF GVSQSQVLDA KKSSGGHSST SAEMDEDKRP SDVSVNQNEA GSDMQPPAST  1140
VTTWGMATVD TAWRAGPETT GTNWGTVQGN ANFNWGCLGQ ETTSVNWGTG QGTFQENGSI  1200
NSGTSAANPP YWGGQQRYAG QRERDFQGRD SSFVRGRSSV NRQSYSYGGP NRVGSFRPPL  1260
KGQRVCKFYE NGYCKKGASC RYWHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein