PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022741079.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 1436aa MW: 158668 Da PI: 5.6251

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022741079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9e-06	1413	1436	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C++ H+ XP_022741079.1 1413 GQRVCK-FYENGYCKKGASCRYWHP 1436 6799.6666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1436 aa Download sequence
MENCQQVEST TALYKPCLQD NVGGGGCVDG GGNNSDSLNR DSLQGVEFMS VDQCQKIPEM 60 DDSQLVGNAD VEVRGDAGAK AETGALNGVK VVELSGGKRR RGRPPRNQVR TTASSVPPPQ 120 RKKKDEEDVC FICFDGGSLV LCDRRGCPKA YHPACIKRDE AFFKSKAKWN CGWHICSTCQ 180 KSSYYMCYTC TYSLCKNCTK DADYLNVRGN KGFCGMCMRT VVLIENSTLE NKEMVQVDFD 240 DQTSWEYLFK VYWIFLKEKL SLSLDELTKA KNPWKETAIM DPKGESSGEL NNISNARGAN 300 MERSCEDLGA SYSKRRKGMK KEKFLNKVES LEAEKPGVMK GMLLPEGTNW ATKELLEFVA 360 HMKHGDLSVL SHFDVQALLL EYVKRSNLRD PRQKSYIVCD SMLIKLFGKA RVAHFEMLKL 420 LESHFLTQDH SRPINTIRAG GSEAVAQLAI DGSNDSHPLI VNNKRRKTRK KVDEKGQKAN 480 LDEFAAIDVH NMNLIYLKRN LMENLIDDTD KFNDKVVGSF VRIKISGSDQ KQDMYRLVQV 540 IGTSKVVEPY KIGERTTDIM LEILNLDKKE IVSIDGISNQ EFAEDECKRL RERIKCGLMK 600 WFTVGEIQEK AVALQAVRVN DWLESEILRV KNLRDRASEK GHMKEFRECI EKLQLLNSPD 660 ERQRRLHEIP DVHSDRNMNL YCKSEEVAGE LDEKKKDNHM KSRNSGSGIK EKEPASPLKG 720 GDILSDIGSR ETSIPLHSTG MELSVNNSET DKIWHYQDPL GKIQGPFSMA TLHRWSLSRH 780 FPPDLRIWRV SEKQKDSILL TDVLDGQYNQ AQQLFHNSCV RTEDMMIVSN DGCQNGDGDV 840 RDSMDLNVTQ MESKQVEGNT MQNDTNGHCY VNKEFVKSKE LALQSSPSTA PVEIVSNAIQ 900 AGSPLPHWDS VNGENDFPCQ PQVSSSLPLS TLSGKPFETQ SHQFSKGHGA ERWDCGLMNI 960 NENLNKTPES QIIAGNVEHD DCEGRSGKSC GQSWRSTPLN DASNGWDSNS GLISLARALE 1020 ASEHNQDIDF PDIPTSTSKL NLEDSKSQAT ENKQSLSSNV PHQDSGPSWS TASSLVGNGP 1080 QLPEIAGEWG GCSSTQVKPS AEEWDSNLVP ESSLKPTVLG SDHVATPTSG SGQLTHFSPT 1140 DPANNASGWD SIVPEPNDSS WGDESVSDLL AEVEAMESLN GLSSPTSILH SDGELAQGSD 1200 PDCFSPVGGL SPAPDPGKSD SLSSTNDLQM PSESTVTNKP FGVSQSQVLD AKKSSGGHSS 1260 TSAEMDEDKR PSDVSVNQNE AGSDMQPPAS TVTTWGMATV DTAWRAGPET TGTNWGTVQG 1320 NANFNWGCLG QETTSVNWGT GQGTFQENGS INSGTSAANP PYWGGQQRYA GQRERDFQGR 1380 DSSFVRGRSS VNRQSYSYGG PNRVGSFRPP LKGQRVCKFY ENGYCKKGAS CRYWHP

Sequence ? help Back to Top

Protein Sequence Length: 1436 aa Download sequence

MENCQQVEST TALYKPCLQD NVGGGGCVDG GGNNSDSLNR DSLQGVEFMS VDQCQKIPEM  60
DDSQLVGNAD VEVRGDAGAK AETGALNGVK VVELSGGKRR RGRPPRNQVR TTASSVPPPQ  120
RKKKDEEDVC FICFDGGSLV LCDRRGCPKA YHPACIKRDE AFFKSKAKWN CGWHICSTCQ  180
KSSYYMCYTC TYSLCKNCTK DADYLNVRGN KGFCGMCMRT VVLIENSTLE NKEMVQVDFD  240
DQTSWEYLFK VYWIFLKEKL SLSLDELTKA KNPWKETAIM DPKGESSGEL NNISNARGAN  300
MERSCEDLGA SYSKRRKGMK KEKFLNKVES LEAEKPGVMK GMLLPEGTNW ATKELLEFVA  360
HMKHGDLSVL SHFDVQALLL EYVKRSNLRD PRQKSYIVCD SMLIKLFGKA RVAHFEMLKL  420
LESHFLTQDH SRPINTIRAG GSEAVAQLAI DGSNDSHPLI VNNKRRKTRK KVDEKGQKAN  480
LDEFAAIDVH NMNLIYLKRN LMENLIDDTD KFNDKVVGSF VRIKISGSDQ KQDMYRLVQV  540
IGTSKVVEPY KIGERTTDIM LEILNLDKKE IVSIDGISNQ EFAEDECKRL RERIKCGLMK  600
WFTVGEIQEK AVALQAVRVN DWLESEILRV KNLRDRASEK GHMKEFRECI EKLQLLNSPD  660
ERQRRLHEIP DVHSDRNMNL YCKSEEVAGE LDEKKKDNHM KSRNSGSGIK EKEPASPLKG  720
GDILSDIGSR ETSIPLHSTG MELSVNNSET DKIWHYQDPL GKIQGPFSMA TLHRWSLSRH  780
FPPDLRIWRV SEKQKDSILL TDVLDGQYNQ AQQLFHNSCV RTEDMMIVSN DGCQNGDGDV  840
RDSMDLNVTQ MESKQVEGNT MQNDTNGHCY VNKEFVKSKE LALQSSPSTA PVEIVSNAIQ  900
AGSPLPHWDS VNGENDFPCQ PQVSSSLPLS TLSGKPFETQ SHQFSKGHGA ERWDCGLMNI  960
NENLNKTPES QIIAGNVEHD DCEGRSGKSC GQSWRSTPLN DASNGWDSNS GLISLARALE  1020
ASEHNQDIDF PDIPTSTSKL NLEDSKSQAT ENKQSLSSNV PHQDSGPSWS TASSLVGNGP  1080
QLPEIAGEWG GCSSTQVKPS AEEWDSNLVP ESSLKPTVLG SDHVATPTSG SGQLTHFSPT  1140
DPANNASGWD SIVPEPNDSS WGDESVSDLL AEVEAMESLN GLSSPTSILH SDGELAQGSD  1200
PDCFSPVGGL SPAPDPGKSD SLSSTNDLQM PSESTVTNKP FGVSQSQVLD AKKSSGGHSS  1260
TSAEMDEDKR PSDVSVNQNE AGSDMQPPAS TVTTWGMATV DTAWRAGPET TGTNWGTVQG  1320
NANFNWGCLG QETTSVNWGT GQGTFQENGS INSGTSAANP PYWGGQQRYA GQRERDFQGR  1380
DSSFVRGRSS VNRQSYSYGG PNRVGSFRPP LKGQRVCKFY ENGYCKKGAS CRYWHP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	124	KRRRGRPPRNQVRTTASSVPPPQRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	0.0	C3H family protein