PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022741076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 387aa MW: 40562.7 Da PI: 8.7211 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.5 | 8.3e-12 | 17 | 41 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++r+G Ck+G++Ck++H++ XP_022741076.1 17 QPVCQYYMRMGRCKFGASCKYHHPK 41 689********************96 PP | |||||||
2 | zf-CCCH | 37.3 | 4.6e-12 | 62 | 86 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++a+tG+Ck+G +CkF+H+ XP_022741076.1 62 GEKECSYYAKTGQCKFGVTCKFHHP 86 7899********************8 PP | |||||||
3 | zf-CCCH | 42.6 | 1e-13 | 211 | 237 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+F+H+p XP_022741076.1 211 PGQPECQYYMKTGDCKYGSSCRFHHPP 237 5789*********************97 PP | |||||||
4 | zf-CCCH | 32.3 | 1.6e-10 | 259 | 283 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G Ck+G+ C+F H++ XP_022741076.1 259 APPCTHYSQHGVCKFGAACRFDHSM 283 689********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence |
MGAGRDGVGE YPERVGQPVC QYYMRMGRCK FGASCKYHHP KQGGGSVSPM SLNYYGYPLR 60 PGEKECSYYA KTGQCKFGVT CKFHHPSPSP APQVAPVPTP VPAPPLYSAV QSPSGPSSQQ 120 YGLVMARPPL MPGPYVQGLY GPLLLSPGVP SWNPYPAPVS PGTQPTVGSS SIFRVTPLSP 180 SAPAYTGSYQ SVPSVGPSSS IQKEQLFPER PGQPECQYYM KTGDCKYGSS CRFHHPPEVI 240 APKADVILSP LRFPLRPGAP PCTHYSQHGV CKFGAACRFD HSMGTLGYGP SVSSLTDMPF 300 VPFPVGSTYG TLAPTSLSSE LGPELLSGSS KDPAPAITSS SVSASSESVG SVFSKVAPVP 360 HSSTQQSSRS SAPSTGSGSS SEAHTSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-108 | C3H family protein |