PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022740950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 403aa MW: 45334.8 Da PI: 5.5569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.1 | 1.3e-12 | 92 | 114 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff++tGtCk+G +CkF+H+ XP_022740950.1 92 EDCSFFLKTGTCKFGLNCKFNHP 114 78********************9 PP | |||||||
2 | zf-CCCH | 22 | 2.8e-07 | 135 | 158 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG CkyG+ C++ H+ XP_022740950.1 135 RIECKYYRATGGCKYGNACRYRHC 158 568******************997 PP | |||||||
3 | zf-CCCH | 37.2 | 4.8e-12 | 181 | 203 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ XP_022740950.1 181 KECPYYMRTGSCGYGASCRFNHP 203 68********************9 PP | |||||||
4 | zf-CCCH | 30.3 | 7e-10 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ CkF+H++ XP_022740950.1 318 PGEPECPYFMKTGYCKFKTACKFHHPK 344 5799*********************96 PP | |||||||
5 | zf-CCCH | 20.7 | 7.3e-07 | 365 | 390 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G CkyG +C F+H++ XP_022740950.1 365 DRKICWNYEKFGVCKYGRSCYFHHPE 390 7899********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence |
MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR 60 NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ 120 DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVLE 180 KECPYYMRTG SCGYGASCRF NHPDPTSAEG SNTFSSDPSG FGGHSSENYN GESDALPSSP 240 KPTAASSSLN MMSDKHVPYL NHNSSSAHVT HLNSEWNGHE EKTSHPYSSR SIHSAMKTED 300 ISKLHQEPIQ VDEFPERPGE PECPYFMKTG YCKFKTACKF HHPKIRSSKP TAFILSSAGL 360 PLRPDRKICW NYEKFGVCKY GRSCYFHHPE NLFSSDFWVD SIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-79 | C3H family protein |