PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022740949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | C3H | ||||||||
Protein Properties | Length: 469aa MW: 53011.7 Da PI: 6.0617 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.8 | 1.5e-12 | 92 | 114 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff++tGtCk+G +CkF+H+ XP_022740949.1 92 EDCSFFLKTGTCKFGLNCKFNHP 114 78********************9 PP | |||||||
2 | zf-CCCH | 21.8 | 3.4e-07 | 135 | 158 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG CkyG+ C++ H+ XP_022740949.1 135 RIECKYYRATGGCKYGNACRYRHC 158 568******************997 PP | |||||||
3 | zf-CCCH | 26.1 | 1.5e-08 | 197 | 217 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++ +G CkyG Ck++H XP_022740949.1 197 ECKYYLTSGGCKYGTACKYSH 217 7******************** PP | |||||||
4 | zf-CCCH | 37 | 5.7e-12 | 247 | 269 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C yG++C+F+H+ XP_022740949.1 247 KECPYYMRTGSCGYGASCRFNHP 269 68********************9 PP | |||||||
5 | zf-CCCH | 30.1 | 8.5e-10 | 384 | 410 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ CkF+H++ XP_022740949.1 384 PGEPECPYFMKTGYCKFKTACKFHHPK 410 5799*********************96 PP | |||||||
6 | zf-CCCH | 20.4 | 8.8e-07 | 431 | 456 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ ++G CkyG +C F+H++ XP_022740949.1 431 DRKICWNYEKFGVCKYGRSCYFHHPE 456 7899********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence |
MGSCEEYSSS LPETPSQTQP ESPSRFNLDT LLSDLYPGTE KEEESLVEGL KSVSLEENDR 60 NSYGDNNNGS ENLQAEWEDG ENYQYPLRPC AEDCSFFLKT GTCKFGLNCK FNHPVGRGFQ 120 DEENYKGWTA EQTGRIECKY YRATGGCKYG NACRYRHCNE DYVLAPLEAN SFGLPVQVVI 180 KENREKDGFK EQTGQIECKY YLTSGGCKYG TACKYSHFKE KSRYLEKSEL PLPELNFLGL 240 PIRMLEKECP YYMRTGSCGY GASCRFNHPD PTSAEGSNTF SSDPSGFGGH SSENYNGESD 300 ALPSSPKPTA ASSSLNMMSD KHVPYLNHNS SSAHVTHLNS EWNGHEEKTS HPYSSRSIHS 360 AMKTEDISKL HQEPIQVDEF PERPGEPECP YFMKTGYCKF KTACKFHHPK IRSSKPTAFI 420 LSSAGLPLRP DRKICWNYEK FGVCKYGRSC YFHHPENLFS SDFWVDSIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-71 | C3H family protein |