PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022740637.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 403aa MW: 45730.9 Da PI: 9.8854

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022740637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.3	6.2e-16	74	116	1	43
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k+i + r t+ kR+ng+ KKA+E S+LC++e ++ii++++ XP_022740637.1 74 KFITKDKVRVSTYQKRKNGLTKKAQEFSILCGVETCIIIYGPQ 116 67888899999******************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MGDVCGSRGQ PLIVANVKCT EKIICLDNWI ILSGETIESL RCKKCSMHLS KFLLKSLFPF 60 FLSSKMGRGK LTMKFITKDK VRVSTYQKRK NGLTKKAQEF SILCGVETCI IIYGPQLKDS 120 PAKLEIWPSD PIKVLNVINK YKAKPLEVRE RKCFNVFDFF ALRQKKLDDE IFKLRKANID 180 AKFSTWDDRI NNFSVNQIWA LLARFDSNLE AANKKIKMIK GKYQTLVEDS KSGMLAGPGT 240 EAIQPRVNLF SQARTCLFQK NLDLEVTSRQ QPMSGLNPFN VNMPSYYPFG SSEALRMHPF 300 SLNPTDNSMT LLSRNGSDFT QMDGESSSSI TYSSLSPQAR YDPGAPMLDN VMFSNPWGVC 360 FYDPFMQPMT PFGQSAMPSF PSQTDKFYRD IGDQYGSKSK KQK

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MGDVCGSRGQ PLIVANVKCT EKIICLDNWI ILSGETIESL RCKKCSMHLS KFLLKSLFPF  60
FLSSKMGRGK LTMKFITKDK VRVSTYQKRK NGLTKKAQEF SILCGVETCI IIYGPQLKDS  120
PAKLEIWPSD PIKVLNVINK YKAKPLEVRE RKCFNVFDFF ALRQKKLDDE IFKLRKANID  180
AKFSTWDDRI NNFSVNQIWA LLARFDSNLE AANKKIKMIK GKYQTLVEDS KSGMLAGPGT  240
EAIQPRVNLF SQARTCLFQK NLDLEVTSRQ QPMSGLNPFN VNMPSYYPFG SSEALRMHPF  300
SLNPTDNSMT LLSRNGSDFT QMDGESSSSI TYSSLSPQAR YDPGAPMLDN VMFSNPWGVC  360
FYDPFMQPMT PFGQSAMPSF PSQTDKFYRD IGDQYGSKSK KQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	7e-25	M-type_MADS family protein