PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022740209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28926.4 Da PI: 10.0059 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.7 | 4e-15 | 12 | 50 | 4 | 42 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 e + r +t+ kR +g+ KKA+E S+LCd++v++iif + XP_022740209.1 12 EHEKTRATTLKKRMKGLKKKAYEFSILCDVKVCMIIFEP 50 667889******************************966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MARGKLSMKL LEHEKTRATT LKKRMKGLKK KAYEFSILCD VKVCMIIFEP KLKDSPAKVE 60 IWPSDPDQVN SIIDKYKSKA ASDAQKKISI IFHFFSILRR QVHDEVAHVR KANFEAKFPT 120 WNDRIDNFSP EEIASFLTKL DLNLEVENRK TMLMKGDDQH NLMQSXQIKA KSFYYIPAAS 180 HLKNLNHSDK HIQAHLPVEI LNHFDHIKSF PQKNVDFGVI WEQLPPPTKP LNIQLPSLSP 240 TDEALVKLPS A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-14 | M-type_MADS family protein |