PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022739559.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

CO-like

Protein Properties

Length: 457aa MW: 51460.1 Da PI: 6.5872

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022739559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.8e-08	17	55	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k++ l+C+ ++ lC C ++ H+ H XP_022739559.1 17 LCDFCNSKPAVLYCRADSAKLCLFCDQQVHSAnalslkH 55 7*****************************655666666 PP
2	zf-B_box	29.5	1.6e-09	58	104	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42 ++C+ ++ k++++ C +++ +lC+dC ++H++ H+++p+ XP_022739559.1 58 SQICDSCNTKPASFLCSNDNLMLCQDCDWNSHNSncsvsalHERSPV 104 689*****************************889999999998875 PP
3	CCT	62.5	1.4e-21	407	451	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a+lRYkeK+k+Rk++K+irYesRKa+A++R+R KGrFvk++e XP_022739559.1 407 RVNAMLRYKEKKKHRKYDKQIRYESRKARADTRKRFKGRFVKASE 451 889***************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MMEKISKSKP RGSMLFLCDF CNSKPAVLYC RADSAKLCLF CDQQVHSANA LSLKHARSQI 60 CDSCNTKPAS FLCSNDNLML CQDCDWNSHN SNCSVSALHE RSPVEGFSGC PLVIELASLF 120 GFDLKPKYLM NFIPGFSLFE QELMKLEDFM VPNENSSVSS ALLSSVKLNH EVYRQLVEMG 180 KRDLVRVSGD GAELGPGTPP VRSAEQGNLP SFEVENGDDE DLLHRQTPFT SLLMLQNNLD 240 LRKNDYVAEG ELMRDFKSSY QASQIWDFQS GRSRDCKDSG PEDTDCINGI KSNSSVIRNF 300 SEFEKEGSLS KPKVFQDMYE VSHSLIFEDS LSRNNCCNQP FSSYTPTTEE SINVPAVGSS 360 SDSKVVEPLK HDGSRYVQVM EPPVLAGSES MNETKAKVDM ELLAQNRVNA MLRYKEKKKH 420 RKYDKQIRYE SRKARADTRK RFKGRFVKAS EAPESRC

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MMEKISKSKP RGSMLFLCDF CNSKPAVLYC RADSAKLCLF CDQQVHSANA LSLKHARSQI  60
CDSCNTKPAS FLCSNDNLML CQDCDWNSHN SNCSVSALHE RSPVEGFSGC PLVIELASLF  120
GFDLKPKYLM NFIPGFSLFE QELMKLEDFM VPNENSSVSS ALLSSVKLNH EVYRQLVEMG  180
KRDLVRVSGD GAELGPGTPP VRSAEQGNLP SFEVENGDDE DLLHRQTPFT SLLMLQNNLD  240
LRKNDYVAEG ELMRDFKSSY QASQIWDFQS GRSRDCKDSG PEDTDCINGI KSNSSVIRNF  300
SEFEKEGSLS KPKVFQDMYE VSHSLIFEDS LSRNNCCNQP FSSYTPTTEE SINVPAVGSS  360
SDSKVVEPLK HDGSRYVQVM EPPVLAGSES MNETKAKVDM ELLAQNRVNA MLRYKEKKKH  420
RKYDKQIRYE SRKARADTRK RFKGRFVKAS EAPESRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	8e-68	CO-like family protein