PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022739368.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 965aa MW: 107155 Da PI: 8.9122

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022739368.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.1e-09	190	211	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022739368.1 190 TQLCKDFMA-GRCRRGSQCHFLH 211 78*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MSGSRKRGSK WDSKEERQHS LENVRDSAWP AKAGMSFHDR ESEHGYFSPE VGRNCNKWSV 60 AKASDMMKSK HGLPSRESLP GSRGGQKDDN INVDCVKNWK TTTLWDGDET YSMKMSPGLE 120 DWRQQNRHHS PKSDWSRSYS MSPIYSFTHR SRSRSWSRSR SRSRSRSPVR GIRRQSGFHE 180 RTRSRSGVST QLCKDFMAGR CRRGSQCHFL HQDIQSDEDG WDNRQKRGGM SKYFTPNDGK 240 DYLIKSGRST DCCADYLKGN CRKGASCRFA HDGASDGFSR GSINEVSRER ENDKRNRVTT 300 PERHVEHEAR RSMDVPCKYF AAGNCRSGKY CRFSHHGEAR ASPERRSRGD RGGWGQTSVS 360 VDKLLGGAKS RDADASFNVE KSWNAPKWSN ANASNEGEKS WSGPKWGDAD ASNEVDKSWT 420 GSKWSDTGAY LGANKLNKET NGKMGASEPR FSDWSLDDRW QHDFDASGKN GESNVHYKTV 480 DIDKDEAIPR KIENAGVSMG AGESLGDMEM SPEWNYGIHS SVKIQHSRSS KSTPVDSSVP 540 AQEKNMTKDA SGWVHDELAA SQPLSTEKSN FQQDHMMRGS SAVALPCDSN DISRNTSVSR 600 IDLNFSTNNL SMPSFDQPGP SSSSLPYSSL GAVGQSQVAI PSNEVNMKVM QNSLLFQEEK 660 PSNKLNIGDT NLLPGNSGTQ STQKMVSSEQ LTQLTNLSAS LAQLFGKGQQ LPQLHVALTA 720 HDPMQVTSFP NSGGPVEPDS VPTVQPGQDI IFQEQYDPIS DSIGPVKTQD TNTKALVISV 780 HPVSQKNTTD GKPELSTNKL LSSSHVDSTN GGDFPNDHSS KREPDFDSHK LNQLKPLASS 840 EVTKENGVEE TKKAEDENKN GPSENIDAED RTDEGKKSKD GKGIRAFKFA LVEFVKDLLK 900 PTWKEGQIGK EAYKNIVKKV VDKVTATMQG TNIPQTPEKI DQYLSFSKPK LSKLVQAYVE 960 KFQKS

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MSGSRKRGSK WDSKEERQHS LENVRDSAWP AKAGMSFHDR ESEHGYFSPE VGRNCNKWSV  60
AKASDMMKSK HGLPSRESLP GSRGGQKDDN INVDCVKNWK TTTLWDGDET YSMKMSPGLE  120
DWRQQNRHHS PKSDWSRSYS MSPIYSFTHR SRSRSWSRSR SRSRSRSPVR GIRRQSGFHE  180
RTRSRSGVST QLCKDFMAGR CRRGSQCHFL HQDIQSDEDG WDNRQKRGGM SKYFTPNDGK  240
DYLIKSGRST DCCADYLKGN CRKGASCRFA HDGASDGFSR GSINEVSRER ENDKRNRVTT  300
PERHVEHEAR RSMDVPCKYF AAGNCRSGKY CRFSHHGEAR ASPERRSRGD RGGWGQTSVS  360
VDKLLGGAKS RDADASFNVE KSWNAPKWSN ANASNEGEKS WSGPKWGDAD ASNEVDKSWT  420
GSKWSDTGAY LGANKLNKET NGKMGASEPR FSDWSLDDRW QHDFDASGKN GESNVHYKTV  480
DIDKDEAIPR KIENAGVSMG AGESLGDMEM SPEWNYGIHS SVKIQHSRSS KSTPVDSSVP  540
AQEKNMTKDA SGWVHDELAA SQPLSTEKSN FQQDHMMRGS SAVALPCDSN DISRNTSVSR  600
IDLNFSTNNL SMPSFDQPGP SSSSLPYSSL GAVGQSQVAI PSNEVNMKVM QNSLLFQEEK  660
PSNKLNIGDT NLLPGNSGTQ STQKMVSSEQ LTQLTNLSAS LAQLFGKGQQ LPQLHVALTA  720
HDPMQVTSFP NSGGPVEPDS VPTVQPGQDI IFQEQYDPIS DSIGPVKTQD TNTKALVISV  780
HPVSQKNTTD GKPELSTNKL LSSSHVDSTN GGDFPNDHSS KREPDFDSHK LNQLKPLASS  840
EVTKENGVEE TKKAEDENKN GPSENIDAED RTDEGKKSKD GKGIRAFKFA LVEFVKDLLK  900
PTWKEGQIGK EAYKNIVKKV VDKVTATMQG TNIPQTPEKI DQYLSFSKPK LSKLVQAYVE  960
KFQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	166	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-19	C3H family protein