PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022739366.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 979aa MW: 108621 Da PI: 8.9175

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022739366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	204	225	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022739366.1 204 TQLCKDFMA-GRCRRGSQCHFLH 225 78*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence
MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS 60 FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV 120 KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYRSRSRSW SRSRSRSRSR 180 SPVRGIRRQS GFHERTRSRS GVSTQLCKDF MAGRCRRGSQ CHFLHQDIQS DEDGWDNRQK 240 RGGMSKYFTP NDGKDYLIKS GRSTDCCADY LKGNCRKGAS CRFAHDGASD GFSRGSINEV 300 SRERENDKRN RVTTPERHVE HEARRSMDVP CKYFAAGNCR SGKYCRFSHH GEARASPERR 360 SRGDRGGWGQ TSVSVDKLLG GAKSRDADAS FNVEKSWNAP KWSNANASNE GEKSWSGPKW 420 GDADASNEVD KSWTGSKWSD TGAYLGANKL NKETNGKMGA SEPRFSDWSL DDRWQHDFDA 480 SGKNGESNVH YKTVDIDKDE AIPRKIENAG VSMGAGESLG DMEMSPEWNY GIHSSVKIQH 540 SRSSKSTPVD SSVPAQEKNM TKDASGWVHD ELAASQPLST EKSNFQQDHM MRGSSAVALP 600 CDSNDISRNT SVSRIDLNFS TNNLSMPSFD QPGPSSSSLP YSSLGAVGQS QVAIPSNEVN 660 MKVMQNSLLF QEEKPSNKLN IGDTNLLPGN SGTQSTQKMV SSEQLTQLTN LSASLAQLFG 720 KGQQLPQLHV ALTAHDPMQV TSFPNSGGPV EPDSVPTVQP GQDIIFQEQY DPISDSIGPV 780 KTQDTNTKAL VISVHPVSQK NTTDGKPELS TNKLLSSSHV DSTNGGDFPN DHSSKREPDF 840 DSHKLNQLKP LASSEVTKEN GVEETKKAED ENKNGPSENI DAEDRTDEGK KSKDGKGIRA 900 FKFALVEFVK DLLKPTWKEG QIGKEAYKNI VKKVVDKVTA TMQGTNIPQT PEKIDQYLSF 960 SKPKLSKLVQ AYVEKFQKS

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence

MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS  60
FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV  120
KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYRSRSRSW SRSRSRSRSR  180
SPVRGIRRQS GFHERTRSRS GVSTQLCKDF MAGRCRRGSQ CHFLHQDIQS DEDGWDNRQK  240
RGGMSKYFTP NDGKDYLIKS GRSTDCCADY LKGNCRKGAS CRFAHDGASD GFSRGSINEV  300
SRERENDKRN RVTTPERHVE HEARRSMDVP CKYFAAGNCR SGKYCRFSHH GEARASPERR  360
SRGDRGGWGQ TSVSVDKLLG GAKSRDADAS FNVEKSWNAP KWSNANASNE GEKSWSGPKW  420
GDADASNEVD KSWTGSKWSD TGAYLGANKL NKETNGKMGA SEPRFSDWSL DDRWQHDFDA  480
SGKNGESNVH YKTVDIDKDE AIPRKIENAG VSMGAGESLG DMEMSPEWNY GIHSSVKIQH  540
SRSSKSTPVD SSVPAQEKNM TKDASGWVHD ELAASQPLST EKSNFQQDHM MRGSSAVALP  600
CDSNDISRNT SVSRIDLNFS TNNLSMPSFD QPGPSSSSLP YSSLGAVGQS QVAIPSNEVN  660
MKVMQNSLLF QEEKPSNKLN IGDTNLLPGN SGTQSTQKMV SSEQLTQLTN LSASLAQLFG  720
KGQQLPQLHV ALTAHDPMQV TSFPNSGGPV EPDSVPTVQP GQDIIFQEQY DPISDSIGPV  780
KTQDTNTKAL VISVHPVSQK NTTDGKPELS TNKLLSSSHV DSTNGGDFPN DHSSKREPDF  840
DSHKLNQLKP LASSEVTKEN GVEETKKAED ENKNGPSENI DAEDRTDEGK KSKDGKGIRA  900
FKFALVEFVK DLLKPTWKEG QIGKEAYKNI VKKVVDKVTA TMQGTNIPQT PEKIDQYLSF  960
SKPKLSKLVQ AYVEKFQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	180	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-18	C3H family protein